Difference between revisions of "WormBase-Caltech Weekly Calls"

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=== Citace upload ===
 
=== Citace upload ===
 
* Send files to Wen by 10am Tuesday (18th)
 
* Send files to Wen by 10am Tuesday (18th)
 +
 +
=== Genotype class ===
 +
* [https://docs.google.com/document/d/19hP9r6BpPW3FSAeC_67FNyNq58NGp4eaXBT42Ch3gDE/edit?usp=sharing ?Genotype class proposal]
 +
* Genotype_name tag: free text summary of the genotype
 +
** Can this be automatically generated from components? Ideally, yes, but may be difficult

Revision as of 18:52, 13 September 2018

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings


GoToMeeting link: https://www.gotomeet.me/wormbase1


2018 Meetings

January

February

March

April

May

June

July

August


September 6, 2018

Genotype class

Citace Upload

  • Send citace files to Wen by Sept 18, 10am Pacific

Automated gene descriptions

  • Group making improvements
  • Added disease, protein domains
    • When direct experimental evidence for disease relevance, will say "gene has been used to study"
  • When minimal data (information-poor genes), we can refer to human ortholog and data stored for that human gene in Alliance
  • Continue to receive feedback from users; include enrichment information, etc.
  • Now have good trimming algorithms to retain important info without flooding a description with too many granular terms
  • Will not store automated descriptions in Postgres
  • Wen will modify SimpleMine scripts to accommodate change
  • Would be good to write a paper on automated concise descriptions
  • Came up at GO meeting/hackathon: Translating GO-CAM models into concise descriptions?
    • Should be doable; just need to develop code when we're ready to do that

Textpresso presentation at next Alliance all-hands call

  • Who should present? Maybe have several people? Kimberly, Valerio, Michael for sections?
  • We can discuss at next Textpresso meeting
  • Should cover techniques and software, but keep it generally simple and comprehensible for a larger audience


September 13, 2018

Citace upload

  • Send files to Wen by 10am Tuesday (18th)

Genotype class

  • ?Genotype class proposal
  • Genotype_name tag: free text summary of the genotype
    • Can this be automatically generated from components? Ideally, yes, but may be difficult