Difference between revisions of "WormBase-Caltech Weekly Calls"
From WormBaseWiki
Jump to navigationJump to search| Line 44: | Line 44: | ||
=== Genotype class === | === Genotype class === | ||
* Chris started initial document to draw up ?Genotype class and make appropriate changes to ?Strain class | * Chris started initial document to draw up ?Genotype class and make appropriate changes to ?Strain class | ||
| + | ** https://docs.google.com/document/d/19hP9r6BpPW3FSAeC_67FNyNq58NGp4eaXBT42Ch3gDE/edit?usp=sharing | ||
* Would be good for people to look at so we can discuss next time | * Would be good for people to look at so we can discuss next time | ||
* Would also be good to have Kevin H take a look and provide feedback | * Would also be good to have Kevin H take a look and provide feedback | ||
| Line 59: | Line 60: | ||
* Will not store automated descriptions in Postgres | * Will not store automated descriptions in Postgres | ||
* Wen will modify SimpleMine scripts to accommodate change | * Wen will modify SimpleMine scripts to accommodate change | ||
| + | * Would be good to write a paper on automated concise descriptions | ||
Revision as of 16:06, 6 September 2018
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2018 Meetings
September 6, 2018
Genotype class
- Chris started initial document to draw up ?Genotype class and make appropriate changes to ?Strain class
- Would be good for people to look at so we can discuss next time
- Would also be good to have Kevin H take a look and provide feedback
Citace Upload
- Send citace files to Wen by Sept 18, 10am Pacific
Automated gene descriptions
- Group making improvements
- Added disease, protein domains
- When direct experimental evidence for disease relevance, will say "gene has been used to study"
- When minimal data (information-poor genes), we can refer to human ortholog and data stored for that human gene in Alliance
- Continue to receive feedback from users; include enrichment information, etc.
- Now have good trimming algorithms to retain important info without flooding a description with too many granular terms
- Will not store automated descriptions in Postgres
- Wen will modify SimpleMine scripts to accommodate change
- Would be good to write a paper on automated concise descriptions
