WormBase-Caltech Weekly Calls
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GoToMeeting link: https://www.gotomeet.me/wormbase1
October 3, 2019
SObA comparison graphs
- Raymond and Juancarlos have worked on a SObA-graph based comparison tool to compare two genes for ontology-based annotations
- Prototype 1
- Prototype 2
Germ line discussion
- Currently, the anatomy ontology has "germ line" as a type of "Cell" and a type of "Tissue", and "germ cell" as a type of "germ line"
- Chris would like to (1) remove "germ line" from under "Cell" and leave it under "Tissue" and (2) move "germ cell" out from under "germ line" and place directly under "Cell"
Script to remove blank entries from Postgres
- Chris stumbled across several entries in the OA that were blank (empty strings ) or consisted of only whitespace, some of which were causing errors upon upload to ACEDB
- Juancarlos has written a script to look for all such entries; 66 on sandbox (likely same on live OA)
- Does anyone object to removing these entries throughout Postgres?