Difference between revisions of "WormBase-Caltech Weekly Calls"

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[[WormBase-Caltech_Weekly_Calls_2020|2020 Meetings]]
 
[[WormBase-Caltech_Weekly_Calls_2020|2020 Meetings]]
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[[WormBase-Caltech_Weekly_Calls_2021|2021 Meetings]]
  
 
= 2021 Meetings =
 
= 2021 Meetings =
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== tm variation - gene associations ==
 
== tm variation - gene associations ==
 
*Update on progress and some questions for the Caltech curators
 
*Update on progress and some questions for the Caltech curators
 
== December 16 2021 ==
 
 
=== tm variation - gene associations ===
 
*Not all tm variation - gene associations are in the nightly geneace dump
 
*We need to retrieve the remainder from WS
 
*WS updates to postgres have apparently not been working for some time; script for downloading WS is not working
 
*We need a better way to get the WS updates
 
*Query WS on spica? automatically generate files from queries of WS on spica?
 
*Future proof: (when) should we start thinking about querying the Alliance, instead?
 
 
=== protein-containing complexes in WB ===
 
*The Complex Portal (EBI) group makes GO annotations to C. elegans protein-containing complexes
 
**448 annotations to 132 unique protein-containing complexes
 
**We currently can't do anything with these annotations, although we will be able to bring in derived annotations to the individual members (once evidence code issues get sorted out)
 
*What do we think about instantiating protein-containing complexes in WB?
 
*How would this fit into the Alliance roadmap?
 

Revision as of 16:07, 13 January 2022