Difference between revisions of "WormBase-Caltech Weekly Calls"

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* Counter with the number of objects already curated by WB for papers returned by searches
 
* Counter with the number of objects already curated by WB for papers returned by searches
  
== Changes to Transgene OA autocomplete
+
== Changes to Transgene OA autocomplete ==

Revision as of 18:01, 26 August 2021

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings

2019 Meetings

2020 Meetings

2021 Meetings

January

February

March

April

May

June

July


August 5, 2021

Proxy issue resolved

  • Not clear what the problem was, but Sibyl transferred to new machine and now it works
  • Could be a firewall issue somewhere but it isn't clear

Textpresso-Dev transfer

  • Michael ordered hard drive
  • Working on transfer
  • Do we need more backup? Have partial backup on AWS; will make complete


August 12, 2021

CeNGEN graph on gene pages

  • We would like to show an expression level graph on each gene page. CeNGEN prefers something similar to what we have for FPKM expression.
  • Sibyl drafted a prototype that is 2D so that it solves the issue of fitting into one page width while making highly expressing cells prominent.


August 19, 2021

Caltech hosted CGIs

  • Caltech IMSS is blocking some WB IP addresses likely from nefarious actors on AWS, thereby breaking WB links to Caltech-hosted CGIs
  • Although WB uses dedicated AWS IPs, those some how still got on a black list.
  • The ultimate solution is to move all services answering WB queries to AWS, so there is no extr-AWS network traffic.
  • Could non-SObA CGIs move to different servers (AWS?)?
  • SObA is resource intensive when new releases are being built but otherwise memory requirements can be tuned (affecting caching) for serving queries. We can use a local machine for building a release and then transfer the built database to a live machine in the cloud. This approach also alleviates some sysadmin load for Caltech.

August 26, 2021

New Wormicloud features

  • Clustering similar words in word clouds
  • Counter with the number of objects already curated by WB for papers returned by searches

Changes to Transgene OA autocomplete