Difference between revisions of "WormBase-Caltech Weekly Calls"
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[[WormBase-Caltech_Weekly_Calls_2020|2020 Meetings]] | [[WormBase-Caltech_Weekly_Calls_2020|2020 Meetings]] | ||
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[[WormBase-Caltech_Weekly_Calls_February_2021|February]] | [[WormBase-Caltech_Weekly_Calls_February_2021|February]] | ||
+ | [[WormBase-Caltech_Weekly_Calls_March_2021|March]] | ||
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− | === | + | == April 1, 2021 == |
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− | === | + | === Antibodies === |
− | * | + | * Alignment of the antibody class to Alliance: |
− | * | + | ** Propose to move possible_pseudonym (192) and Other_animal (37) to remarks. Those tags are not currently used for curation. |
− | + | *** Other animal is sometimes used for older annotations, e.g. authors say that the antibodies were raised both in rats and rabbits. Standard practice would create 2 records, one for the rat antibody and one for the rabbit. | |
− | * | + | *** Possible pseudonym was used when a curator was not able to unambiguously assign a previous antibody to a record. (we have a Other name -synonym- tag to capture unambiguous ones). When moving to remarks we can keep a controlled vocabulary for easy future parsing, e.g. “possible_pseudonym:” |
+ | ** Antigen field: currently separated into Protein, peptide, and other_antigen (e.g.: homogenate of early C.elegans embryos, sperm). Propose to use just one antigen field to capture antigen info. | ||
− | + | All changes proposed above were approved by the group | |
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+ | === textpress-dev clean up === | ||
+ | * Michael has asked curators to assess what they have on textpresso-dev as it will not be around forever :-( | ||
+ | * is it okay to transfer data and files we want to keep to tazendra? and then to our own individual machines? | ||
+ | * Direct access may be possible via Caltech VPN | ||
+ | * Do we want to move content to AWS? May be complicated; it is still easy and cheap to maintain local file systems/machines | ||
− | == | + | === Braun servers === |
+ | * 3 servers stored in Braun server room; is there a new contact person for accessing these servers? | ||
+ | * Mike Miranda replacement just getting settled; Paul will find out who is managing the server room and let Raymond know | ||
− | === | + | === Citace upload === |
− | * | + | * Next Friday, April 9th, by end of the day |
− | * | + | * Wen will contact Paul Davis for the frozen WS280 models file |
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Revision as of 17:06, 1 April 2021
Contents
Previous Years
2021 Meetings
April 1, 2021
Antibodies
- Alignment of the antibody class to Alliance:
- Propose to move possible_pseudonym (192) and Other_animal (37) to remarks. Those tags are not currently used for curation.
- Other animal is sometimes used for older annotations, e.g. authors say that the antibodies were raised both in rats and rabbits. Standard practice would create 2 records, one for the rat antibody and one for the rabbit.
- Possible pseudonym was used when a curator was not able to unambiguously assign a previous antibody to a record. (we have a Other name -synonym- tag to capture unambiguous ones). When moving to remarks we can keep a controlled vocabulary for easy future parsing, e.g. “possible_pseudonym:”
- Antigen field: currently separated into Protein, peptide, and other_antigen (e.g.: homogenate of early C.elegans embryos, sperm). Propose to use just one antigen field to capture antigen info.
- Propose to move possible_pseudonym (192) and Other_animal (37) to remarks. Those tags are not currently used for curation.
All changes proposed above were approved by the group
textpress-dev clean up
- Michael has asked curators to assess what they have on textpresso-dev as it will not be around forever :-(
- is it okay to transfer data and files we want to keep to tazendra? and then to our own individual machines?
- Direct access may be possible via Caltech VPN
- Do we want to move content to AWS? May be complicated; it is still easy and cheap to maintain local file systems/machines
Braun servers
- 3 servers stored in Braun server room; is there a new contact person for accessing these servers?
- Mike Miranda replacement just getting settled; Paul will find out who is managing the server room and let Raymond know
Citace upload
- Next Friday, April 9th, by end of the day
- Wen will contact Paul Davis for the frozen WS280 models file