Difference between revisions of "WormBase-Caltech Weekly Calls"
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* Would like to set this up for WormBase and ultimately for the Alliance, but this will require some developer help | * Would like to set this up for WormBase and ultimately for the Alliance, but this will require some developer help | ||
* Work on this next month (after AFP and GO grant submissions)? | * Work on this next month (after AFP and GO grant submissions)? | ||
+ | |||
+ | ===Update cycle for HGNC data in the OA (Ranjana) === | ||
+ | *Juancarlos had these questions for us: | ||
+ | <pre style="white-space: pre-wrap; | ||
+ | white-space: -moz-pre-wrap; | ||
+ | white-space: -pre-wrap; | ||
+ | white-space: -o-pre-wrap; | ||
+ | word-wrap: break-word"> | ||
+ | |||
+ | There's a script here that repopulates the postgres obo_*_hgnc tables | ||
+ | based off of Chris and Wen's data | ||
+ | /home/postgres/work/pgpopulation/obo_oa_ontologies/populate_obo_hgnc.pl | ||
+ | |||
+ | It's not on a cronjob, because I think the files are not updated that | ||
+ | often. Do we want to run this every night, or run it manually when | ||
+ | the files get re-generated ? Or run every night, and check if the | ||
+ | files's timestamps have changed, then repopulate postgres ? | ||
+ | |||
+ | </pre> |
Revision as of 23:50, 13 January 2021
Contents
Previous Years
2021 Meetings
January 14th, 2021
PubMed LinkOut to WormBase Paper Pages (Kimberly)
- Other databases link out from PubMed to their respective paper pages
- For example, https://pubmed.ncbi.nlm.nih.gov/20864032/ links out to GO and MGI paper pages
- Would like to set this up for WormBase and ultimately for the Alliance, but this will require some developer help
- Work on this next month (after AFP and GO grant submissions)?
Update cycle for HGNC data in the OA (Ranjana)
- Juancarlos had these questions for us:
There's a script here that repopulates the postgres obo_*_hgnc tables based off of Chris and Wen's data /home/postgres/work/pgpopulation/obo_oa_ontologies/populate_obo_hgnc.pl It's not on a cronjob, because I think the files are not updated that often. Do we want to run this every night, or run it manually when the files get re-generated ? Or run every night, and check if the files's timestamps have changed, then repopulate postgres ?