Difference between revisions of "WormBase-Caltech Weekly Calls"

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==Nov 12th, 2020==
 
==Nov 12th, 2020==
 
=== Cynthia Kenyon tool ===
 
=== Cynthia Kenyon tool ===
* developed a new tool for the worm, complete with very nice tutorials, for analyzing gene expression data using Gene Module analysis.
+
* developed a new tool for the worm, complete with very nice tutorials, for analyzing gene expression data using Gene Module analysis.  
 +
* tool at http://genemodules.org
 
* add link outs from the gene expression widget or add in general WB tools?
 
* add link outs from the gene expression widget or add in general WB tools?
  
 
=== Graphical curation tool update===
 
=== Graphical curation tool update===
 
* We will show a live demo on the current state of the graphical curation tool
 
* We will show a live demo on the current state of the graphical curation tool

Revision as of 16:09, 12 November 2020

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings

2019 Meetings



2020 Meetings

January

February

March

April

May

June

July

August

September

October


Nov 5th, 2020

WS279 GAF 2.0 and disease files

  • Valerio and Ranjana still working with the GAF 2.0 files to generate gene descriptions
  • Valerio and Ranjana will probably have a meeting with Magdalena to sort out the FTP file issues for gene descriptions
  • Will let Raymond know if the disease GAFs are okay after they test these for gene descriptions
  • Raymond needs the GAFs for WoBR

Experimenting with addeding new citace data to the current WS release

  • Wen will take the newest expression, physical interaction, and paper class from postgres, add them to WS279 to create a "WS279.1" version of ACeDB database. Then compare WS279.1 to WS279 by comparing the SimpleMine results generated from these two versions of ACeDB. The goal is to explore the possibility of notifying users some of the new curation since the data freeze for the WS build.

MicroPub user webinar on Nov 9th

  • Ranjana and Kimberly have conflicts--Alliance call and GO call. Anyway microPub team is running the show and they have other WormBasers to help as well.

WS280 deadlines

  • Caltech files due for citace: Dec 15th, 2020


Nov 12th, 2020

Cynthia Kenyon tool

  • developed a new tool for the worm, complete with very nice tutorials, for analyzing gene expression data using Gene Module analysis.
  • tool at http://genemodules.org
  • add link outs from the gene expression widget or add in general WB tools?

Graphical curation tool update

  • We will show a live demo on the current state of the graphical curation tool