Difference between revisions of "WormBase-Caltech Weekly Calls"
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[[WormBase-Caltech_Weekly_Calls_July_2020|July]] | [[WormBase-Caltech_Weekly_Calls_July_2020|July]] | ||
+ | [[WormBase-Caltech_Weekly_Calls_August_2020|August]] | ||
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− | == | + | == September 3, 2020 == |
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=== WS279 Citace upload === | === WS279 Citace upload === | ||
− | * | + | * September 25 |
− | + | * Local CIT upload (to Wen) Tuesday September 22 by 10am Pacific | |
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− | == | + | === New AFP datatype for curation status form (CSF)? === |
+ | * afp_othergenefunc (to capture gene function other than enzymatic activity) | ||
+ | * Can wait a bit before adding to CSF; if there will be dedicated curation for that data type we may add later | ||
− | === | + | === GO annotation for description === |
− | * | + | * Kimberly will look into 'male tail tip developement' terms for description |
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− | === | + | === Migrate wobr1 server to AWS === |
− | * | + | * SOLR, WOBr, SObA, Enrichment analysis |
− | * | + | * Working with Sibyl on the process |
− | * | + | * Will try migrating wobr1 first, as a test case |
− | * | + | * May eventually move, for example, Tazendra |
− | * | + | ** Will there be drawbacks to doing this? |
− | * | + | ** Can we regularly ssh into Tazendra on AWS without issue? Costs for transferring large files |
− | * | + | * Don't yet know the details of the costs, but we can try and keep track |
− | + | * We should move into WB or Alliance AWS instances (or Stanford) | |
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− | === | + | === WormBase talk at Boston Area Worm Meeting === |
− | * | + | * https://www.umassmed.edu/ambroslab/meetings/bawm/ |
− | * | + | * Meeting will be virtual on Zoom |
− | * | + | * Chris will give a talk September 23rd, 6pm Eastern, 3pm Pacific (probably first speaker but not sure) |
− | * | + | * Send topic requests to Chris for the talk |
+ | * Current topics: | ||
+ | ** Micropublications | ||
+ | ** Author First Pass | ||
+ | ** Automated Gene Descriptions | ||
+ | ** Community Curation | ||
+ | ** WB Query Tools | ||
+ | * Chris will ask organizers if others can join: post on WormBase blog? May draw too large an audience for the zoom channel; | ||
+ | * If the organizers record the talk, we can post it on the blog and WB YouTube channel |
Revision as of 16:57, 3 September 2020
Contents
Previous Years
2020 Meetings
September 3, 2020
WS279 Citace upload
- September 25
- Local CIT upload (to Wen) Tuesday September 22 by 10am Pacific
New AFP datatype for curation status form (CSF)?
- afp_othergenefunc (to capture gene function other than enzymatic activity)
- Can wait a bit before adding to CSF; if there will be dedicated curation for that data type we may add later
GO annotation for description
- Kimberly will look into 'male tail tip developement' terms for description
Migrate wobr1 server to AWS
- SOLR, WOBr, SObA, Enrichment analysis
- Working with Sibyl on the process
- Will try migrating wobr1 first, as a test case
- May eventually move, for example, Tazendra
- Will there be drawbacks to doing this?
- Can we regularly ssh into Tazendra on AWS without issue? Costs for transferring large files
- Don't yet know the details of the costs, but we can try and keep track
- We should move into WB or Alliance AWS instances (or Stanford)
WormBase talk at Boston Area Worm Meeting
- https://www.umassmed.edu/ambroslab/meetings/bawm/
- Meeting will be virtual on Zoom
- Chris will give a talk September 23rd, 6pm Eastern, 3pm Pacific (probably first speaker but not sure)
- Send topic requests to Chris for the talk
- Current topics:
- Micropublications
- Author First Pass
- Automated Gene Descriptions
- Community Curation
- WB Query Tools
- Chris will ask organizers if others can join: post on WormBase blog? May draw too large an audience for the zoom channel;
- If the organizers record the talk, we can post it on the blog and WB YouTube channel