Difference between revisions of "WormBase-Caltech Weekly Calls"
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[[WormBase-Caltech_Weekly_Calls_2019|2019 Meetings]] | [[WormBase-Caltech_Weekly_Calls_2019|2019 Meetings]] | ||
| + | [[WormBase-Caltech_Weekly_Calls_2020|2020 Meetings]] | ||
| + | = 2021 Meetings = | ||
| + | == January 14th, 2021 == | ||
| − | = | + | ===PubMed LinkOut to WormBase Paper Pages (Kimberly) === |
| + | * Other databases [https://www.ncbi.nlm.nih.gov/projects/linkout/doc/nonbiblinkout.html link out from PubMed] to their respective paper pages | ||
| + | * For example, https://pubmed.ncbi.nlm.nih.gov/20864032/ links out to GO and MGI paper pages | ||
| + | * Would like to set this up for WormBase and ultimately for the Alliance, but this will require some developer help | ||
| + | * Work on this next month (after AFP and GO grant submissions)? | ||
| − | + | ===Update cycle for HGNC data in the OA (Ranjana) === | |
| + | *Juancarlos had these questions for us: | ||
| + | <pre style="white-space: pre-wrap; | ||
| + | white-space: -moz-pre-wrap; | ||
| + | white-space: -pre-wrap; | ||
| + | white-space: -o-pre-wrap; | ||
| + | word-wrap: break-word"> | ||
| − | + | There's a script here that repopulates the postgres obo_*_hgnc tables | |
| + | based off of Chris and Wen's data | ||
| + | /home/postgres/work/pgpopulation/obo_oa_ontologies/populate_obo_hgnc.pl | ||
| − | + | It's not on a cronjob, because I think the files are not updated that | |
| + | often. Do we want to run this every night, or run it manually when | ||
| + | the files get re-generated ? Or run every night, and check if the | ||
| + | files's timestamps have changed, then repopulate postgres ? | ||
| − | + | </pre> | |
| − | + | ===Minutes=== | |
| + | ====PubMed LinkOut to WormBase Paper Pages==== | ||
| − | + | ====Update cycle for HGNC data in the OA==== | |
| + | *We will update when Alliance updates the data | ||
| + | *Juancarlos will set it to check the timestamps and if they change will do an update for the OAs | ||
| − | + | ====CENGEN==== | |
| − | + | *Wen, Daniela, and Raymond will look at the datasets to work out how to incorporate. Start simple. | |
| − | + | *We will make links to pages on their site. | |
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Latest revision as of 20:03, 14 January 2021
Contents
Previous Years
2021 Meetings
January 14th, 2021
PubMed LinkOut to WormBase Paper Pages (Kimberly)
- Other databases link out from PubMed to their respective paper pages
- For example, https://pubmed.ncbi.nlm.nih.gov/20864032/ links out to GO and MGI paper pages
- Would like to set this up for WormBase and ultimately for the Alliance, but this will require some developer help
- Work on this next month (after AFP and GO grant submissions)?
Update cycle for HGNC data in the OA (Ranjana)
- Juancarlos had these questions for us:
There's a script here that repopulates the postgres obo_*_hgnc tables based off of Chris and Wen's data /home/postgres/work/pgpopulation/obo_oa_ontologies/populate_obo_hgnc.pl It's not on a cronjob, because I think the files are not updated that often. Do we want to run this every night, or run it manually when the files get re-generated ? Or run every night, and check if the files's timestamps have changed, then repopulate postgres ?
Minutes
PubMed LinkOut to WormBase Paper Pages
Update cycle for HGNC data in the OA
- We will update when Alliance updates the data
- Juancarlos will set it to check the timestamps and if they change will do an update for the OAs
CENGEN
- Wen, Daniela, and Raymond will look at the datasets to work out how to incorporate. Start simple.
- We will make links to pages on their site.
