Difference between revisions of "WormBase-Caltech Weekly Calls"

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= 2020 Meetings =
 
= 2020 Meetings =
  
== January 9, 2020 ==
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[[WormBase-Caltech_Weekly_Calls_January_2020|January]]
  
=== Phenotype Curation Requests ===
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* 1,229 emails sent Dec 3-6, 2019
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== February 6, 2020 ==
* Received 194 annotations from 40 papers and from 37 distinct community curators
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** 37 papers requested, 3 additional papers annotated
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=== Worcester Area Worm Meeting talk ===
** 104 Phenotype OA annotations (from 27 papers; 25 distinct curators)
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* Confirmed for December 2020 or February 2021
** 90 RNAi OA annotations (from 20 papers; 19 distinct curators)
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* 43 bounced emails
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=== Alaska software ===
** 2 resent to new addresses
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* Code developed and maintained by Joseph, but not long term solution
** 5 have backup email addresses (also sent)
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* Raymond and Eduardo talked about taking it over
 +
* Why have a web application vs. a command-line application?
 +
** Wanted to make it easy, but also to capture meta data for WB
 +
* Should/will find out from Joseph about how hard it is to maintain the software
 +
* Maybe it could be taken over by Alliance, as RNA-Seq/Microarray meta data are getting harmonized
 +
* Expression working group working with Brian Oliver to have GEO take in more structured meta data
 +
* Array Express tried requiring more structured meta data, but authors stopped submitting
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* May be possible to build a form that collects meta data while simultaneously submitting to GEO in parallel
 +
 
 +
 
 +
== February 13, 2020 ==
 +
 
 +
=== Alliance Literature Group ===
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* Held first meeting on Monday, February 10th
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* Regular meetings will be on Tuesdays at 10am/1pm/6pm
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* Representatives from each group will give a brief overview of their literature pipelines before the group gets into details about deliverables
 +
* Question about centralized paper repository; group needs guidance from Alliance PIs on how to proceed
 +
 
 +
=== ?Genotype class model ===
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* [https://docs.google.com/document/d/19hP9r6BpPW3FSAeC_67FNyNq58NGp4eaXBT42Ch3gDE/edit?pli=1#bookmark=id.7r3e8pg19rd8 Proposal]
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* Can aim to implement for WS277 but may have to wait until WS278
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=== Genotype OA ===
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* Will put documentation [[Genotype|here]]
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=== WB All-Hands Meeting ===
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* [https://doodle.com/poll/7f65p4ba6d88ztzt Doodle poll]
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* Any thoughts at this point?  Still need to discuss with Hinxton, Toronto.

Latest revision as of 19:30, 13 February 2020

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings

2019 Meetings


GoToMeeting link: https://www.gotomeet.me/wormbase1

2020 Meetings

January


February 6, 2020

Worcester Area Worm Meeting talk

  • Confirmed for December 2020 or February 2021

Alaska software

  • Code developed and maintained by Joseph, but not long term solution
  • Raymond and Eduardo talked about taking it over
  • Why have a web application vs. a command-line application?
    • Wanted to make it easy, but also to capture meta data for WB
  • Should/will find out from Joseph about how hard it is to maintain the software
  • Maybe it could be taken over by Alliance, as RNA-Seq/Microarray meta data are getting harmonized
  • Expression working group working with Brian Oliver to have GEO take in more structured meta data
  • Array Express tried requiring more structured meta data, but authors stopped submitting
  • May be possible to build a form that collects meta data while simultaneously submitting to GEO in parallel


February 13, 2020

Alliance Literature Group

  • Held first meeting on Monday, February 10th
  • Regular meetings will be on Tuesdays at 10am/1pm/6pm
  • Representatives from each group will give a brief overview of their literature pipelines before the group gets into details about deliverables
  • Question about centralized paper repository; group needs guidance from Alliance PIs on how to proceed

?Genotype class model

  • Proposal
  • Can aim to implement for WS277 but may have to wait until WS278

Genotype OA

  • Will put documentation here

WB All-Hands Meeting

  • Doodle poll
  • Any thoughts at this point? Still need to discuss with Hinxton, Toronto.