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Searches according to SVM classification

Searches Other_expr pattern papers with medium and high confidence

Searches according to Paper Type

Searches Journal Article, Letter

Searches by section

The results of the test searches, per section, were as below. The number corresponds to the number of papers returned.

abstract 0

acknowledgments 1

author 0

conclusion 0

discussion 38

introduction 27

materials 12

non-sectioned 36

references 19

results 181

title 0

year 0

From this, I would say we should perform the searches using the five categories and looking in discussion, introduction, materials, non-sectioned, references, and results.

Script explanation - Juancarlos

The script that gets stuff to tazendra from textpresso is :

 /home/postgres/public_html/cgi-bin/data/ccc_gocuration/get_newset.pl

called by :

 /home/postgres/work/pgpopulation/textpresso/wrapper.sh             

On textpresso there have been no new matches since Oct 12

The full results are on textpresso-dev at :

 /data2/srv/textpresso-dev.caltech.edu/www/docroot/azurebrd/ccc_datafiles/good_sentences_file.*

The new matches are at :

 /data2/srv/textpresso-dev.caltech.edu/www/docroot/azurebrd/ccc_datafiles/recent_sentences_file.*

They're comparing to svm results from :

 http://caprica.caltech.edu/celegans/svm_results/Juancarlos/otherexpr

You can check the recent good_sentences_file.* and see if any of those should be in SVM, or you can look at the full text of the SVM results and see if any of those should be in the good_sentences_file.* If you don't have a textpresso-dev account, you can ask Michael, and he'll ask the its people. I log on with my its account.

If stuff should be in the good_sentences_file.* and isn't, check that the categories have what they should have, and let me know which category isn't matching what it should.

The good_sentences_file.* is generated by :

 /home/azurebrd/work/get_kimberly_go_gene_component_verb_localization/get_go_gene_component.pl

The category files being used are in :

 /data2/data-processing/data/celegans/Data/indices/body/semantic/categories

files :

 protein_celegans 
 localization_cell_components_082208 
 localization_verbs_082208 
 localization_other_120107

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