Difference between revisions of "WormBase"
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Return to [[Caltech documentation]] | Return to [[Caltech documentation]] | ||
| − | + | == Searches by section == | |
The results of the test searches, per section, were as below. The number corresponds to the number of papers returned. | The results of the test searches, per section, were as below. The number corresponds to the number of papers returned. | ||
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From this, I would say we should perform the searches using the five categories and looking in discussion, introduction, materials, non-sectioned, references, and results. | From this, I would say we should perform the searches using the five categories and looking in discussion, introduction, materials, non-sectioned, references, and results. | ||
| − | + | == Script explanation - Juancarlos == | |
The script that gets stuff to tazendra from textpresso is : | The script that gets stuff to tazendra from textpresso is : | ||
Revision as of 19:40, 27 August 2010
Return to Caltech documentation
Searches by section
The results of the test searches, per section, were as below. The number corresponds to the number of papers returned.
abstract 0
acknowledgments 1
author 0
conclusion 0
discussion 38
introduction 27
materials 12
non-sectioned 36
references 19
results 181
title 0
year 0
From this, I would say we should perform the searches using the five categories and looking in discussion, introduction, materials, non-sectioned, references, and results.
Script explanation - Juancarlos
The script that gets stuff to tazendra from textpresso is :
/home/postgres/public_html/cgi-bin/data/ccc_gocuration/get_newset.pl
called by :
/home/postgres/work/pgpopulation/textpresso/wrapper.sh
On textpresso there have been no new matches since Oct 12
The full results are on textpresso-dev at :
/data2/srv/textpresso-dev.caltech.edu/www/docroot/azurebrd/ccc_datafiles/good_sentences_file.*
The new matches are at :
/data2/srv/textpresso-dev.caltech.edu/www/docroot/azurebrd/ccc_datafiles/recent_sentences_file.*
They're comparing to svm results from :
http://caprica.caltech.edu/celegans/svm_results/Juancarlos/otherexpr
You can check the recent good_sentences_file.* and see if any of those should be in SVM, or you can look at the full text of the SVM results and see if any of those should be in the good_sentences_file.* If you don't have a textpresso-dev account, you can ask Michael, and he'll ask the its people. I log on with my its account.
If stuff should be in the good_sentences_file.* and isn't, check that the categories have what they should have, and let me know which category isn't matching what it should.
The good_sentences_file.* is generated by :
/home/azurebrd/work/get_kimberly_go_gene_component_verb_localization/get_go_gene_component.pl
The category files being used are in :
/data2/data-processing/data/celegans/Data/indices/body/semantic/categories
files :
protein_celegans localization_cell_components_082208 localization_verbs_082208 localization_other_120107
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