What's staying in postgres?
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For now, we will keep several types of annotations in postgres:
- ncRNA
- uncloned loci
- IEP evidence code
- IEP evidence code annotations made to proteins will eventually be manually deleted from postgres and entered into protein2go
- other specific annotations that have unique issues
- fox-1 annotations that have yDp13 in with/from - will need to work out with uniprot how to handle these
- jnk-1 and sir-2.1 annotations that have a WBTransgene in the with/from column - will need to work out with uniprot how to handle these
- Cre-vbh-1 annotations - will be added to uniprot manually and then deleted from postgres
- gst-10 - annotations will be added to uniprot manually using a doi as reference id and then deleted from postgres