Difference between revisions of "Website:WormMine Builds"

From WormBaseWiki
Jump to navigationJump to search
(Added deployment information for WS239-2.)
(Added stub for WS240 ACeDB dump.)
Line 1: Line 1:
 +
=== WS240 ===
 +
 +
==== Build ====
 +
 +
===== ACeDB Dump =====
 +
 +
Host: WormMine dev server (206.108.125.174)
 +
 +
Path: <code>/home/jbaran/src</code>
 +
 +
Command: <code>./website-intermine/scripts/dump_ace.sh /home/jbaran/dumps/ws240</code>
 +
 +
Output:
 +
 +
<span style="color: red">'''None, so far. Dump failed due to lack of disk space.'''</span>
 +
 +
 
=== WS239 ===
 
=== WS239 ===
  

Revision as of 16:27, 18 November 2013

WS240

Build

ACeDB Dump

Host: WormMine dev server (206.108.125.174)

Path: /home/jbaran/src

Command: ./website-intermine/scripts/dump_ace.sh /home/jbaran/dumps/ws240

Output:

None, so far. Dump failed due to lack of disk space.


WS239

Build

Host: WormMine dev server (206.108.125.174)

Path: /home/jbaran/src/website-intermine/acedb-dev/intermine/wormmine

Command: ../bio/scripts/project_build -l -v localhost joachim_ws239_2

Summary:

action name                                   time in seconds
-------------------------------------------------------------
entrez-organism                                           95
create-chromosome-locations-and-lengths                  708
do-sources                                                25
create-search-index                                      983
summarise-objectstore                                    245
create-autocomplete-index                                 28
create-attribute-indexes                                  95
transfer-sequences                                    248429
final-dump                                               697

total                                                 251305

Deployment

Host: WormMine production server (206.108.125.166)

Path: /nfs/wormbase/archive/jbaran/WS239-2

Commands:

dropdb -U intermine joachim-ws239-2
createdb -U intermine -E SQL_ASCII joachim-ws239-2
pg_restore -U intermine_admin -d joachim-ws239-2 joachim_ws239_2.final

Required Disk Space:

1.3G joachim_ws239_2.final + 17G PostgreSQL DB