Website:Visualization with ggplot2 of the R-Project
Jump to navigationJump to search
Revision as of 18:57, 6 November 2013 by Joachim.baran (Updated how to start Rserve on dev/staging.)
# Installation instructions based on Debian 7.1. # Installs R. Version 2.14 or newer required. sudo apt-get install r-base # Installs Ruby and Ruby gems. Version 1.9 or newer required. sudo apt-get install ruby ruby-dev rubygems # ggplot2: plotting of many different scientific graphs using a # single unified interface. Drawback: the instructions here # require user input. sudo R # ...then type # install.packages("ggplot2") # ...and exit R after the installation has completed. # Defaults: lets you tinker with R default settings. wget http://cran.r-project.org/src/contrib/Defaults_1.1-1.tar.gz sudo R CMD INSTALL Defaults_1.1-1.tar.gz # Rserve: R server that can be accessed via Ruby, Python, but not Perl. wget http://www.rforge.net/Rserve/snapshot/Rserve_1.8-0.tar.gz sudo R CMD INSTALL Rserve_1.8-0.tar.gz # Install Ruby gem that provides programmatic access to Rserve. sudo gem install rserve-client # Install Perl IPC::Run3 module, which is used to call the wrapper "script/rserve_client.rb". sudo cpan install IPC::Run3
Starting the Rserve Daemon
staging.wormbase.org (same machine).
sudo -u jenkins R_HOME=/usr/lib/R /usr/lib/R/bin/Rserve --no-save