WebDev 2016.03.22-Agenda and Minutes

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JBrowse & GBrowse

  • Working on tutorial for uploading and sharing data in JBrowse
  • Trying to figure out how to deal with making a persistant popup balloon in GBrowse in light of the default link configuration (they are incompatible)
    • Adam suggested writing a JS hack to intercept the link and display the balloon--that might work.


  • Rest work--found a closure module that may help making a more standard rest interface


  • Continue working on Visualizing Human Variations feature:
    • Getting data from Parasite: homology, aligned sequence, exon and domain position
      • Created a small client to fetch and temporarily storing data for use in a variety of places
    • (WIP) convert coordinates and draw graphic based on the actual data
    • Problems to resolve:
      • how to handle multiple splice variants
      • how to handle overlapping domain assignments by multiple standards
      • ensure DNA alignment and protein alignment can align correctly to each other