Difference between revisions of "WebDev 2016.03.22-Agenda and Minutes"
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==Web== | ==Web== | ||
| − | * Parasite: | + | * Continue working on Visualizing Human Variations feature: |
| + | ** Getting data from Parasite: homology, aligned sequence, exon and domain position | ||
| + | *** Created a small client to fetch and temporarily storing data for use in a variety of places | ||
| + | ** (WIP) convert coordinates and draw graphic based on the actual data | ||
| + | **Problems to resolve: | ||
| + | *** how to handle multiple splice variants | ||
| + | *** how to handle overlapping domain assignments by multiple standards | ||
| + | *** ensure DNA alignment and protein alignment can align correctly to each other | ||
Revision as of 13:45, 22 March 2016
JBrowse & GBrowse
- Working on tutorial for uploading and sharing data in JBrowse
- Trying to figure out how to deal with making a persistant popup balloon in GBrowse in light of the default link configuration (they are incompatible)
- Adam suggested writing a JS hack to intercept the link and display the balloon--that might work.
Datomic
- Rest work--found a closure module that may help making a more standard rest interface
Web
- Continue working on Visualizing Human Variations feature:
- Getting data from Parasite: homology, aligned sequence, exon and domain position
- Created a small client to fetch and temporarily storing data for use in a variety of places
- (WIP) convert coordinates and draw graphic based on the actual data
- Problems to resolve:
- how to handle multiple splice variants
- how to handle overlapping domain assignments by multiple standards
- ensure DNA alignment and protein alignment can align correctly to each other
- Getting data from Parasite: homology, aligned sequence, exon and domain position
