Difference between revisions of "WebDev 2016.03.22-Agenda and Minutes"
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==Datomic== | ==Datomic== | ||
− | + | * got a testing instance of website running partially off Clojure API | |
− | *Rest work--found a | + | *Rest work--found a Clojure module that may help making a more standard rest interface |
+ | * things to think about: | ||
+ | ** where to place tests for API code that has been ported to Clojure | ||
==Web== | ==Web== |
Revision as of 14:38, 22 March 2016
JBrowse & GBrowse
- Working on tutorial for uploading and sharing data in JBrowse
- Trying to figure out how to deal with making a persistant popup balloon in GBrowse in light of the default link configuration (they are incompatible)
- Adam suggested writing a JS hack to intercept the link and display the balloon--that might work.
Datomic
- got a testing instance of website running partially off Clojure API
- Rest work--found a Clojure module that may help making a more standard rest interface
- things to think about:
- where to place tests for API code that has been ported to Clojure
Web
- Continue working on Visualizing Human Variations feature:
- Getting data from Parasite: homology, aligned sequence, exon and domain position
- Created a small client to fetch and temporarily storing data for use in a variety of places
- (WIP) convert coordinates and draw graphic based on the actual data
- Problems to resolve:
- how to handle multiple splice variants
- how to handle overlapping domain assignments by multiple standards
- ensure DNA alignment and protein alignment can align correctly to each other
- Getting data from Parasite: homology, aligned sequence, exon and domain position