WebDev 2015.02.06-Agenda and Minutes
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Contents
Agenda
1. Administration update (Todd; 5 minute)
2. WS246 / WS247 development status (Sibyl)
- Discussion on improving FPKM images
- Elsevier paper linking to WormBase, fixed search bugs so linking works correctly
- Interval search progress - via GFF or Ace
- LS: Tabix format for indexing a GFF file
3. Mozilla Science Project - hackathon
- March 7th and 8th
- GW has an application for showing genomic structural rearrangements -- could be an interactive application
- LEGO plots for genomic variation
- Show all six nucleotides and tri-nucleotide context
4. JBrowse/GBrowse update status (Scott)
- Takes as input file from GBrowse build output that lists features and types present in GFF
- Requires 24 hours on dev instance
- Most WormBase data is done
- modENCODE data is proving slower to port
- Tracks for mimicking heat map glyph
- Compressing tracks with very long citations
- LS: Could they be popovers/rollovers
5. Intermine development update (Todd, for Paulo in absentia)
6. OAuth discussion
- Also use something that works with ORCID.
- If we use an ORCID ID, we can associate users with papers.
