Difference between revisions of "WebDev 2015.02.06-Agenda and Minutes"
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== 2. WS246 / WS247 development status (Sibyl) == | == 2. WS246 / WS247 development status (Sibyl) == | ||
− | + | * Discussion on improving FPKM images | |
+ | * Elsevier paper linking to WormBase, fixed search bugs so linking works correctly | ||
+ | * Interval search progress - via GFF or Ace | ||
+ | ** LS: Tabix format for indexing a GFF file | ||
− | |||
− | == 5. OAuth discussion == | + | == 3. Mozilla Science Project - hackathon == |
+ | * March 7th and 8th | ||
+ | * GW has an application for showing genomic structural rearrangements -- could be an interactive application | ||
+ | * LEGO plots for genomic variation | ||
+ | ** Show all six nucleotides and tri-nucleotide context | ||
+ | |||
+ | == 4. JBrowse/GBrowse update status (Scott) == | ||
+ | |||
+ | * Takes as input file from GBrowse build output that lists features and types present in GFF | ||
+ | * Requires 24 hours on dev instance | ||
+ | * Most WormBase data is done | ||
+ | * modENCODE data is proving slower to port | ||
+ | * Tracks for mimicking heat map glyph | ||
+ | * Compressing tracks with very long citations | ||
+ | ** LS: Could they be popovers/rollovers | ||
+ | |||
+ | == 5. Intermine development update (Todd, for Paulo in absentia) == | ||
+ | |||
+ | == 6. OAuth discussion == | ||
+ | |||
+ | * Also use something that works with ORCID. | ||
+ | * If we use an ORCID ID, we can associate users with papers. |
Latest revision as of 16:51, 6 February 2015
Contents
Agenda
1. Administration update (Todd; 5 minute)
2. WS246 / WS247 development status (Sibyl)
- Discussion on improving FPKM images
- Elsevier paper linking to WormBase, fixed search bugs so linking works correctly
- Interval search progress - via GFF or Ace
- LS: Tabix format for indexing a GFF file
3. Mozilla Science Project - hackathon
- March 7th and 8th
- GW has an application for showing genomic structural rearrangements -- could be an interactive application
- LEGO plots for genomic variation
- Show all six nucleotides and tri-nucleotide context
4. JBrowse/GBrowse update status (Scott)
- Takes as input file from GBrowse build output that lists features and types present in GFF
- Requires 24 hours on dev instance
- Most WormBase data is done
- modENCODE data is proving slower to port
- Tracks for mimicking heat map glyph
- Compressing tracks with very long citations
- LS: Could they be popovers/rollovers
5. Intermine development update (Todd, for Paulo in absentia)
6. OAuth discussion
- Also use something that works with ORCID.
- If we use an ORCID ID, we can associate users with papers.