Difference between revisions of "WebDev 2013.09.20-Agenda and Minutes"
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= Agenda = | = Agenda = | ||
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== 1. Adminstrative update (Todd) == | == 1. Adminstrative update (Todd) == | ||
| + | * dev.wormbase.org | ||
| + | ** AC, JB - everything working well | ||
| + | ** JW - some problems with GFF | ||
| + | ** performance great | ||
| + | |||
| + | * ace issue? | ||
| + | ** ace was segfaulting | ||
| + | ** can fix by turning off restarting in xinetd, kill sgif, turn on xinetd | ||
== 2. GFF3 discussion (Abby, Joachim, Todd) == | == 2. GFF3 discussion (Abby, Joachim, Todd) == | ||
| + | AC - coming along... | ||
| + | * will push to staging today | ||
| + | |||
| + | JB - focusing on c_elegans | ||
| + | * things looking good - work out of the box | ||
| + | * will check all other species today | ||
| + | * Scott Cain - should work with gbrowse v2.55, tested | ||
== 3. Intermine objectives for WS239 (JD and Todd) == | == 3. Intermine objectives for WS239 (JD and Todd) == | ||
| + | |||
| + | * GFF3 and FASTA | ||
| + | |||
| + | * RNAi and Orthologs | ||
| + | |||
| + | * classes expanded and updated, issue loading some of that data | ||
| + | * fasta sequence | ||
| + | |||
| + | * GFF3, some problems with the data | ||
| + | |||
| + | |||
| + | |||
| + | |||
| + | * Objectives | ||
| + | ** All FASTA gff3 | ||
| + | ** updated specs for new classes | ||
| + | *** RNAi, Orthologs | ||
| + | |||
| + | |||
| + | * loaded protein, genomic data | ||
| + | * loaded gff3 data - problems with semicolons | ||
| + | ** will run overnight | ||
| + | |||
| + | * Orthologies | ||
| + | ** going to be biggest | ||
| + | |||
| + | * concerned with time | ||
| + | |||
| + | * JW - couldn't get jd.wormbase.org working | ||
| + | ** problems with static paths | ||
== 4. Web development review for WS239 == | == 4. Web development review for WS239 == | ||
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* Database handles | * Database handles | ||
* Gene History | * Gene History | ||
| + | |||
| + | * JB - visualization work | ||
| + | ** retriving static images | ||
== 5. Open Table == | == 5. Open Table == | ||
| + | |||
| + | GFF3 change update document | ||
Latest revision as of 15:58, 20 September 2013
Contents
Agenda
1. Adminstrative update (Todd)
- dev.wormbase.org
- AC, JB - everything working well
- JW - some problems with GFF
- performance great
- ace issue?
- ace was segfaulting
- can fix by turning off restarting in xinetd, kill sgif, turn on xinetd
2. GFF3 discussion (Abby, Joachim, Todd)
AC - coming along...
- will push to staging today
JB - focusing on c_elegans
- things looking good - work out of the box
- will check all other species today
- Scott Cain - should work with gbrowse v2.55, tested
3. Intermine objectives for WS239 (JD and Todd)
- GFF3 and FASTA
- RNAi and Orthologs
- classes expanded and updated, issue loading some of that data
- fasta sequence
- GFF3, some problems with the data
- Objectives
- All FASTA gff3
- updated specs for new classes
- RNAi, Orthologs
- loaded protein, genomic data
- loaded gff3 data - problems with semicolons
- will run overnight
- Orthologies
- going to be biggest
- concerned with time
- JW - couldn't get jd.wormbase.org working
- problems with static paths
4. Web development review for WS239
- Database handles
- Gene History
- JB - visualization work
- retriving static images
5. Open Table
GFF3 change update document
