Difference between revisions of "WebDev 2013.08.16-Agenda and Minutes"
From WormBaseWiki
Jump to navigationJump to search (Created page with '= Agenda = == 1. Administrative Update (Todd; 5 minutes) == == 2. Mobile app development (Antonio; 10 minutes) == == 3. General Development update (JD, Joachim) == '''GBrows…') |
|||
(8 intermediate revisions by 2 users not shown) | |||
Line 7: | Line 7: | ||
== 3. General Development update (JD, Joachim) == | == 3. General Development update (JD, Joachim) == | ||
− | ''' | + | '''Joachim''' |
+ | ; bug fixing | ||
+ | :protein view: can see multiple locations if a protein is encoded by more than one gene | ||
+ | :transgene: fixed display; added unit tests for a bunch of things | ||
+ | :fixing the download widget | ||
+ | == 4. Intermine Development (JD; 10 minutes) == | ||
− | + | Summary: | |
+ | * table for prioritizing data loading | ||
+ | * Expanded gene and transcript with updated loader specification | ||
+ | * Finished CDS, except see error below | ||
+ | |||
+ | |||
+ | * Data loading surprise: | ||
+ | ** https://github.com/WormBase/website/issues/1682 | ||
+ | ** Unknown time required for resolution | ||
* Documentation status and location | * Documentation status and location | ||
+ | ** Version 1 out | ||
+ | ** http://wiki.wormbase.org/index.php/Administration:Installing_WormMine#Dependencies | ||
+ | |||
+ | == 5. WS239 development objectives == | ||
+ | |||
+ | ''As discussed 09 Aug 2013'' | ||
+ | |||
+ | '''Genome Browsers''' | ||
+ | * Finalize and launch survey, mid September | ||
+ | * Draw up requirements document | ||
+ | * Short list of candidates | ||
+ | |||
+ | '''Administration''' | ||
+ | * prepare NAR manuscript | ||
+ | * Cloud: consolidate expiring reserved instances | ||
+ | * Begin next migration steps | ||
+ | |||
+ | '''Intermine''' | ||
+ | * expand coverage of existing classes, particularly: | ||
+ | ** variation: distinguish polymorphisms from alleles; add meaningful content on nature of molecular change | ||
+ | ** gene: add orthologs | ||
+ | *** JD: Will require 2.5 days | ||
+ | *** TH: Double it. | ||
+ | *** JD - time allotted: a little over a week | ||
+ | ** rnai/phenotype: time permitting |
Latest revision as of 15:24, 16 August 2013
Contents
Agenda
1. Administrative Update (Todd; 5 minutes)
2. Mobile app development (Antonio; 10 minutes)
3. General Development update (JD, Joachim)
Joachim
- bug fixing
- protein view: can see multiple locations if a protein is encoded by more than one gene
- transgene: fixed display; added unit tests for a bunch of things
- fixing the download widget
4. Intermine Development (JD; 10 minutes)
Summary:
- table for prioritizing data loading
- Expanded gene and transcript with updated loader specification
- Finished CDS, except see error below
- Data loading surprise:
- https://github.com/WormBase/website/issues/1682
- Unknown time required for resolution
- Documentation status and location
5. WS239 development objectives
As discussed 09 Aug 2013
Genome Browsers
- Finalize and launch survey, mid September
- Draw up requirements document
- Short list of candidates
Administration
- prepare NAR manuscript
- Cloud: consolidate expiring reserved instances
- Begin next migration steps
Intermine
- expand coverage of existing classes, particularly:
- variation: distinguish polymorphisms from alleles; add meaningful content on nature of molecular change
- gene: add orthologs
- JD: Will require 2.5 days
- TH: Double it.
- JD - time allotted: a little over a week
- rnai/phenotype: time permitting