Difference between revisions of "WebDev 2013.08.16-Agenda and Minutes"

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(Created page with '= Agenda = == 1. Administrative Update (Todd; 5 minutes) == == 2. Mobile app development (Antonio; 10 minutes) == == 3. General Development update (JD, Joachim) == '''GBrows…')
 
 
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== 3. General Development update (JD, Joachim) ==
 
== 3. General Development update (JD, Joachim) ==
  
'''GBrowse'''
+
'''Joachim'''
 +
; bug fixing
 +
:protein view: can see multiple locations if a protein is encoded by more than one gene
 +
:transgene: fixed display; added unit tests for a bunch of things
 +
:fixing the download widget
  
 +
== 4. Intermine Development (JD; 10 minutes) ==
  
== 4. Intermine Development (JD; 10 minutes) ==
+
Summary:
 +
* table for prioritizing data loading
 +
* Expanded gene and transcript with updated loader specification
 +
* Finished CDS, except see error below
 +
 
 +
 
 +
* Data loading surprise:
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** https://github.com/WormBase/website/issues/1682
 +
** Unknown time required for resolution
  
 
* Documentation status and location
 
* Documentation status and location
 +
** Version 1 out
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** http://wiki.wormbase.org/index.php/Administration:Installing_WormMine#Dependencies
 +
 +
== 5. WS239 development objectives ==
 +
 +
''As discussed 09 Aug 2013''
 +
 +
'''Genome Browsers'''
 +
* Finalize and launch survey, mid September
 +
* Draw up requirements document
 +
* Short list of candidates
 +
 +
'''Administration'''
 +
* prepare NAR manuscript
 +
* Cloud: consolidate expiring reserved instances
 +
* Begin next migration steps
 +
 +
'''Intermine'''
 +
* expand coverage of existing classes, particularly:
 +
** variation: distinguish polymorphisms from alleles; add meaningful content on nature of molecular change
 +
** gene: add orthologs
 +
*** JD: Will require 2.5 days
 +
*** TH: Double it.
 +
*** JD - time allotted: a little over a week
 +
** rnai/phenotype: time permitting

Latest revision as of 15:24, 16 August 2013

Agenda

1. Administrative Update (Todd; 5 minutes)

2. Mobile app development (Antonio; 10 minutes)

3. General Development update (JD, Joachim)

Joachim

bug fixing
protein view: can see multiple locations if a protein is encoded by more than one gene
transgene: fixed display; added unit tests for a bunch of things
fixing the download widget

4. Intermine Development (JD; 10 minutes)

Summary:

  • table for prioritizing data loading
  • Expanded gene and transcript with updated loader specification
  • Finished CDS, except see error below


5. WS239 development objectives

As discussed 09 Aug 2013

Genome Browsers

  • Finalize and launch survey, mid September
  • Draw up requirements document
  • Short list of candidates

Administration

  • prepare NAR manuscript
  • Cloud: consolidate expiring reserved instances
  • Begin next migration steps

Intermine

  • expand coverage of existing classes, particularly:
    • variation: distinguish polymorphisms from alleles; add meaningful content on nature of molecular change
    • gene: add orthologs
      • JD: Will require 2.5 days
      • TH: Double it.
      • JD - time allotted: a little over a week
    • rnai/phenotype: time permitting