Difference between revisions of "WebDev 2013.08.09-Agenda and Minutes"
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*** JD: Will require 2.5 days | *** JD: Will require 2.5 days | ||
*** TH: Double it. | *** TH: Double it. | ||
+ | *** JD - time allotted: a little over a week | ||
** rnai/phenotype: time permitting | ** rnai/phenotype: time permitting | ||
Latest revision as of 17:57, 9 August 2013
Contents
Agenda
1. Administrative update (Todd; 5 minutes)
2. Mobile app development (Antonio; 10 minutes)
3. General development update (JD, Joachim)
GBrowse issues
Joachim
- Glyph height
- FASTA download, cannot disable button
- Tried disabling in the DOM
- BLAST e-value sorting
- DataTables plug-in for sorting on scientific value
- Interactors
- Microrna
Process pages
Outstanding issues
GFF3 plans
1. change perl modules over
2. check attributtes
3. merge configurations and standardize
Todd will load GFF2 and GFF3.
4. Intermine development update (JD; 10 minutes)
Update pipeline
- Ant build pipeline; reads JSON for bioproject IDs
- Working on staging/production strategy
- Worked on some user requests (like counts request from Keith Bradnam)
- Documentation; request vanilla machine for installing mine.
- JD will let TH know specs
5. WS239 development priorities
GFF3!
- Native GFF3 arrives with WS239
Genome Browsers
- Finalize and launch survey, mid September
- Draw up requirements document
- Short list of candidates
Administration
- prepare NAR manuscript
- Cloud: consolidate expiring reserved instances
- Begin next migration steps
Intermine
- expand coverage of existing classes, particularly:
- variation: distinguish polymorphisms from alleles; add meaningful content on nature of molecular change
- gene: add orthologs
- JD: Will require 2.5 days
- TH: Double it.
- JD - time allotted: a little over a week
- rnai/phenotype: time permitting
Prioritize classes
- orthologs
- RNAi
- Variations