Difference between revisions of "WebDev 2013.08.09-Agenda and Minutes"

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''GBrowse issues''
 
''GBrowse issues''
 +
 +
Joachim
 +
* Glyph height
 +
* FASTA download, cannot disable button
 +
** Tried disabling in the DOM
 +
* BLAST e-value sorting
 +
** DataTables plug-in for sorting on scientific value
 +
* Interactors
 +
* Microrna
 +
  
 
''Process pages''
 
''Process pages''
  
 
''Outstanding issues''
 
''Outstanding issues''
 +
 +
 +
 +
 +
GFF3 plans
 +
1. change perl modules over
 +
2. check attributtes
 +
3. merge configurations and standardize
 +
 +
Todd will load GFF2 and GFF3.
  
 
== 4. Intermine development update (JD; 10 minutes) ==
 
== 4. Intermine development update (JD; 10 minutes) ==
 +
 +
'''Update pipeline'''
 +
* Ant build pipeline; reads JSON for bioproject IDs
 +
* Working on staging/production strategy
 +
* Worked on some user requests (like counts request from Keith Bradnam)
 +
* Documentation; request vanilla machine for installing mine.
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** '''JD will let TH know specs'''
  
 
== 5. WS239 development priorities ==
 
== 5. WS239 development priorities ==
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** variation: distinguish polymorphisms from alleles; add meaningful content on nature of molecular change
 
** variation: distinguish polymorphisms from alleles; add meaningful content on nature of molecular change
 
** gene: add orthologs
 
** gene: add orthologs
 +
*** JD: Will require 2.5 days
 +
*** TH: Double it.
 +
*** JD - time allotted: a little over a week
 
** rnai/phenotype: time permitting
 
** rnai/phenotype: time permitting
 +
 +
Prioritize classes
 +
* orthologs
 +
* RNAi
 +
* Variations

Latest revision as of 17:57, 9 August 2013

Agenda

1. Administrative update (Todd; 5 minutes)

2. Mobile app development (Antonio; 10 minutes)

3. General development update (JD, Joachim)

GBrowse issues

Joachim

  • Glyph height
  • FASTA download, cannot disable button
    • Tried disabling in the DOM
  • BLAST e-value sorting
    • DataTables plug-in for sorting on scientific value
  • Interactors
  • Microrna


Process pages

Outstanding issues



GFF3 plans 1. change perl modules over 2. check attributtes 3. merge configurations and standardize

Todd will load GFF2 and GFF3.

4. Intermine development update (JD; 10 minutes)

Update pipeline

  • Ant build pipeline; reads JSON for bioproject IDs
  • Working on staging/production strategy
  • Worked on some user requests (like counts request from Keith Bradnam)
  • Documentation; request vanilla machine for installing mine.
    • JD will let TH know specs

5. WS239 development priorities

GFF3!

  • Native GFF3 arrives with WS239

Genome Browsers

  • Finalize and launch survey, mid September
  • Draw up requirements document
  • Short list of candidates

Administration

  • prepare NAR manuscript
  • Cloud: consolidate expiring reserved instances
  • Begin next migration steps

Intermine

  • expand coverage of existing classes, particularly:
    • variation: distinguish polymorphisms from alleles; add meaningful content on nature of molecular change
    • gene: add orthologs
      • JD: Will require 2.5 days
      • TH: Double it.
      • JD - time allotted: a little over a week
    • rnai/phenotype: time permitting

Prioritize classes

  • orthologs
  • RNAi
  • Variations