WebDev 2013.07.05-Agenda and Minutes

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Agenda

1. IWM Review (10 minutes)

  • expanded presence
    • 4 workshops
      • well attended (50/180/50/120)
    • standardized posters
    • live helpdesk
      • projector
    • handouts in abstract book
  • Good feedback - users enjoy new site
    • TODO: tag discussion forum, link to objects


  • Bio Hackathon (JB)
    • project:
      • genomic data -> RDF -> binary (compress & index) -> display on jBrowse

2. Quick minutes review (5 minutes)

  • Error trapping & logging
  • Intermine branding
  • Intermine beta launch

3. Status of current projects

3a. Abby (10 minutes)

  • debugging site falling over
    • look into mysql connections
    • check io/memory on machine
  • writing tests

3b. Antonio (5 minutes)

  • search implemented
  • converting to backbone.js
  • next step: writing templates
    • tablet view: use website template
    • phone view - handlebars.js

3c. JD (10 minutes)

  • giving more time to web issues
    • Process pages
      • Cell lineage viewer -> Look into using Expression/lineage viewer from Tom Burgland(sp?)
  • IM
    • prioritizing tests
    • data issues -> for next release
    • most requested data additions
  • Documentation/Automation
    • TH would like progress for next release

3d. Joachim (10 minutes)

  • GBrowse - fixed polyA issue
  • project IDs in config
  • Blast page, multiple project ids -> separate dbs, show results beside each other
  • Blast all Caenorhabditis - TH, new issue

3e. Todd (5 minutes)

  • DNS moved from CSHL

4. Tasks to resolve before WS239 (16 August 2013)

  • Finish logging / error trapping (JB)
  • Expand testing suite with new use cases (JB)
  • Complete outstanding GBrowse issues (JB)
  • Process page development (JD)
  • Intermine documentation and automation workflow (ID)
  • Crush outstanding issues (AC)

5. Future plans

  • WS239 released by Hinxton (09 Aug)
  • Lineage viewer
  • Expression viewer
  • Synteny tool
  • Begin new genome browser exploration
  • Begin web backend due requirements and due diligence
  • Begin second phase of cloud migration