Difference between revisions of "WebDev 2013.05.06-Agenda and Minutes"

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(Created page with '= Caching = = Intermine Progress = * Intermine meeting = GBrowse config standardlization =')
 
 
(5 intermediate revisions by the same user not shown)
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= Caching =
 
= Caching =
 +
* Should we switch to precompiling data structures vs html?
 +
* Faster caching by storing data structures - but slower HTML generation
 +
* TODO: run html under load (AB - benchmarking tool)
 +
* TODO: will look into templating - speed up
 +
 +
= GBrowse =
 +
* gene feature on reverse strand showing reverse.
 +
** GBrowse problem.
 +
** Waiting for GMOD to get back
 +
* Standardize config
 +
** Kevin & Michael are working on GBrowse config - communicate with them
 +
* GFF3
 +
** WS238
 +
** JB wants a snapshot, see the difference
 +
* spreadsheet - TH will find it
 +
* Looking at several issues - feature page, location widget, already there?
 +
** sequence should be shown on feature
  
 
= Intermine Progress =
 
= Intermine Progress =
 +
* configuration - going well
 +
* began branding the webapp
 +
** [http://206.108.125.166:8080/wormmine/begin.do webapp]
 +
** going through all webapp docs to understand config files
 +
** will redirect links to WB report pages
 +
** bring in header/footer to intermine
 +
* Documenting intermine
 +
** engage curators/users
 +
** get more feedback - need to teach ppl how to use it
 +
** leave feedback please
 +
* Engaging Raymond more
 +
** Writing docs/modifying configs
 +
** Intermine liason w/ curators
 +
** JD will focus on technical issues
 +
** Regular calls every week - WormMine strategy
 +
* WormMine tutorial - after Full Group call
 +
** TH: might not be a good time?
 +
** JB: record tutorial
 +
* Hosting
 +
** how will this perform under load?
 +
* Is the data correct?
 +
** No idea - get curators to test
 +
** Raymond can do this?
 +
 +
* WB app
 +
** added cytoscape to Process page
 +
 
* Intermine meeting
 
* Intermine meeting
  
= GBrowse config standardlization =
+
= Production =
 +
* work on production environment
 +
** problem where email is being black listed from one node
 +
** problems registering to forums
 +
 
 +
* We should look into MyWormBase

Latest revision as of 15:53, 10 May 2013

Caching

  • Should we switch to precompiling data structures vs html?
  • Faster caching by storing data structures - but slower HTML generation
  • TODO: run html under load (AB - benchmarking tool)
  • TODO: will look into templating - speed up

GBrowse

  • gene feature on reverse strand showing reverse.
    • GBrowse problem.
    • Waiting for GMOD to get back
  • Standardize config
    • Kevin & Michael are working on GBrowse config - communicate with them
  • GFF3
    • WS238
    • JB wants a snapshot, see the difference
  • spreadsheet - TH will find it
  • Looking at several issues - feature page, location widget, already there?
    • sequence should be shown on feature

Intermine Progress

  • configuration - going well
  • began branding the webapp
    • webapp
    • going through all webapp docs to understand config files
    • will redirect links to WB report pages
    • bring in header/footer to intermine
  • Documenting intermine
    • engage curators/users
    • get more feedback - need to teach ppl how to use it
    • leave feedback please
  • Engaging Raymond more
    • Writing docs/modifying configs
    • Intermine liason w/ curators
    • JD will focus on technical issues
    • Regular calls every week - WormMine strategy
  • WormMine tutorial - after Full Group call
    • TH: might not be a good time?
    • JB: record tutorial
  • Hosting
    • how will this perform under load?
  • Is the data correct?
    • No idea - get curators to test
    • Raymond can do this?
  • WB app
    • added cytoscape to Process page
  • Intermine meeting

Production

  • work on production environment
    • problem where email is being black listed from one node
    • problems registering to forums
  • We should look into MyWormBase