WebDev 2010.06.16-Agenda and Minutes

Agenda

1. Administrative Update (Todd; 5 minutes)

• development deadline today (06/16)
• some bitbucket tickets for OICR

2. API development update and goals (Xq & Norie, 15 minutes)

Discuss how to make information easier to present:

• global navigation bar
• contextual nav bar
• use 2 panel selector

• sequence page: http://beta.wormbase.org/reports/sequence/JC8.10a/?view=page
• protein page: http://beta.wormbase.org/reports/protein/WP:CE28239/?view=page

3. modENCODE liftover status (Xq and Todd; 5 minutes)

• track rearrangement: http://wb-gb1.oicr.on.ca:8085/fgb2/gbrowse/c_elegans/

4. Ontology Search update (Norie; 10 minutes)

ontology search form:

• multi-ontology: http://dev.wormbase.org/db/ontology/search
• go: http://dev.wormbase.org/db/ontology/gene
• anatomy: http://dev.wormbase.org/db/ontology/anatomy
• phenotype: http://dev.wormbase.org/db/misc/phenotype

search resutls:

search all ontologies for unc-26:

http://dev.wormbase.org/db/ontology/search?ontologies=biological_process&ontologies=cellular_component&ontologies=molecular_function&ontologies=anatomy&ontologies=phenotype&query=unc-26&sort=alpha&filters=d&filters=s&Submit=Submit&.cgifields=with_annotations_only&.cgifields=filters&.cgifields=string_modifications&.cgifields=ontologies

search all ontologies for egg:

http://dev.wormbase.org/db/ontology/search?ontologies=biological_process&ontologies=cellular_component&ontologies=molecular_function&ontologies=anatomy&ontologies=phenotype&query=egg&sort=alpha&filters=d&filters=s&Submit=Submit&.cgifields=with_annotations_only&.cgifields=filters&.cgifields=string_modifications&.cgifields=ontologies