Difference between revisions of "WebDev 2010.04.28-Agenda and Minutes"

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* On going, started 04/27/2010
 
* On going, started 04/27/2010
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* need to nix some old files
  
 
== 6. Outstanding Help Desk Issues (all; 10 minutes) ==
 
== 6. Outstanding Help Desk Issues (all; 10 minutes) ==
  
 
Anatomy ontology search
 
Anatomy ontology search

Revision as of 16:27, 28 April 2010

Agenda

1. Administration Update (Todd; 10 minutes)

  • Debugging production envt.
  • Mirroring -- Caltech
  • Fixed ftp site software

2. Discuss BioMart issues and timeline (all; 10 minutes)

  • AC working with help desk to streamline mart set-up.
  • TH to help with machine

3. Discuss Genome Browser 2 issues (all; 10 minutes)

Sequence dumper streamline

  • fixed, works on dev.

gbrowse_img problem: created too many files under /tmperdata/c_elegans/

  • XS fixed and change is out.

Other notes:

  • Track rendering works fine
  • Nucleosome coverage

4. Discuss modENCODE migration status (Xq, all; 10 minutes)

finished moving Henikoff, Lieb, Piano and Snyder data; is currently loading Waterston data(hillier integrated transcripts)

 http://wb-www1.oicr.on.ca:8080/db/gb2/gbrowse/c_elegans/?name=IV%3A120%2C000..130%2C000

edit wiki on how to install samtools and Bio-BigFile package

http://www.wormbase.org/wiki/index.php/GBrowse_Administration#Install_Bio-BigFile

Will continue updating the modencode migration wiki Abby initiated

 http://www.wormbase.org/wiki/index.php/Brute_force_-_modencode_migration

5. WS214 status (Norie; 5 minutes)

  • On going, started 04/27/2010
  • need to nix some old files

6. Outstanding Help Desk Issues (all; 10 minutes)

Anatomy ontology search