Difference between revisions of "WebDev 2010.04.28-Agenda and Minutes"
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== 3. Discuss Genome Browser 2 issues (all; 10 minutes) == | == 3. Discuss Genome Browser 2 issues (all; 10 minutes) == | ||
| − | Sequence dumper | + | Sequence dumper streamline |
| − | gbrowse_img problem: created too many files under / | + | * fixed, works on dev. |
| + | |||
| + | gbrowse_img problem: created too many files under /tmperdata/c_elegans/ | ||
| + | |||
| + | * XS fixed and change is out. | ||
| + | |||
| + | Other notes: | ||
| + | |||
| + | * Track rendering works fine | ||
| + | * Nucleosome coverage | ||
== 4. Discuss modENCODE migration status (Xq, all; 10 minutes) == | == 4. Discuss modENCODE migration status (Xq, all; 10 minutes) == | ||
Revision as of 16:22, 28 April 2010
Contents
- 1 Agenda
- 1.1 1. Administration Update (Todd; 10 minutes)
- 1.2 2. Discuss BioMart issues and timeline (all; 10 minutes)
- 1.3 3. Discuss Genome Browser 2 issues (all; 10 minutes)
- 1.4 4. Discuss modENCODE migration status (Xq, all; 10 minutes)
- 1.5 5. WS214 status (Norie; 5 minutes)
- 1.6 6. Outstanding Help Desk Issues (all; 10 minutes)
Agenda
1. Administration Update (Todd; 10 minutes)
- Debugging production envt.
- Mirroring -- Caltech
- Fixed ftp site software
2. Discuss BioMart issues and timeline (all; 10 minutes)
- AC working with help desk to streamline mart set-up.
- TH to help with machine
3. Discuss Genome Browser 2 issues (all; 10 minutes)
Sequence dumper streamline
- fixed, works on dev.
gbrowse_img problem: created too many files under /tmperdata/c_elegans/
- XS fixed and change is out.
Other notes:
- Track rendering works fine
- Nucleosome coverage
4. Discuss modENCODE migration status (Xq, all; 10 minutes)
finished moving Henikoff, Lieb, Piano and Snyder data; is currently loading Waterston data(hillier integrated transcripts)
http://wb-www1.oicr.on.ca:8080/db/gb2/gbrowse/c_elegans/?name=IV%3A120%2C000..130%2C000
edit wiki on how to install samtools and Bio-BigFile package
http://www.wormbase.org/wiki/index.php/GBrowse_Administration#Install_Bio-BigFile
Will continue updating the modencode migration wiki Abby initiated
http://www.wormbase.org/wiki/index.php/Brute_force_-_modencode_migration
5. WS214 status (Norie; 5 minutes)
6. Outstanding Help Desk Issues (all; 10 minutes)
Anatomy ontology search
