Difference between revisions of "WebDev 2009.12.09-Agenda and Minutes"
From WormBaseWiki
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* GBrowse II Rollout | * GBrowse II Rollout | ||
* [[Species_available_through_WormBase_%28overview%29|Tier II/Tier III handling]] | * [[Species_available_through_WormBase_%28overview%29|Tier II/Tier III handling]] | ||
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− | |||
** some file downloads not working | ** some file downloads not working | ||
** check genome browser linkings | ** check genome browser linkings | ||
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** we need direct links to Gbrowsers | ** we need direct links to Gbrowsers | ||
** AC still working with config files | ** AC still working with config files | ||
+ | ** Gbrowse updated in CPAN | ||
* Site 2.0 demo | * Site 2.0 demo |
Revision as of 17:41, 9 December 2009
Contents
Agenda
1. Administrative Update (Todd, 10 minutes)
- Scheduling for next weeks -- regular call 12/16; 12/23; 01/06; -- off 12/30
- Development deadline -- 12/16
2. Discuss WS209 update status (Norie; 10 minutes)
- GFF and acedb steps mostly complete
- Anticipate being complete Friday
- Changes from Michael
- Todd will install MySQL 5.1 to match databases from Michael
- Cleaned up display for the updated disease search
3. GBrowse2 Progress (Abby & Xiaoqi; 10 minutes)
AC:
- links provided below
- some gene models feature doesn't link properly to details page
- library conflict occasionally dogs work
- gbrowse_details need some debugging for some tier III features
- standardization of displays well underway
- footer issue
- toggle header
XS:
- imbedded images, necessary functionalities that enable them to work will be released soon: LS
- inclusion of protein motif?
Tier I:
http://dev.wormbase.org/db/gb2/gbrowse/c_elegans/
http://dev.wormbase.org/db/gb2/gbrowse/c_elegans_gmap/ <-- Does not work in dev or live
http://dev.wormbase.org/db/gb2/gbrowse/c_elegans_pmap/
Tier II:
http://dev.wormbase.org/db/gb2/gbrowse/c_brenneri/
http://dev.wormbase.org/db/gb2/gbrowse/c_briggsae/
http://dev.wormbase.org/db/gb2/gbrowse/c_japonica/
http://dev.wormbase.org/db/gb2/gbrowse/c_remanei/
http://dev.wormbase.org/db/gb2/gbrowse/p_pacificus/
Tier III:
http://dev.wormbase.org/db/gb2/gbrowse/b_malayi/
http://dev.wormbase.org/db/gb2/gbrowse/h_contortus/
http://dev.wormbase.org/db/gb2/gbrowse/m_hapla/
http://dev.wormbase.org/db/gb2/gbrowse/m_incognita/
- Nbrowse -- what to do given new db requirements. TH: Grant read-only access to the world for nbrowse db; will contact Mark.
4. Define SAB Goals (All; 10 minutes)
- GBrowse II Rollout
- Tier II/Tier III handling
- some file downloads not working
- check genome browser linkings
- matrix needs populating by SAB meeting time -- careful assessment of genome handling
- we need direct links to Gbrowsers
- AC still working with config files
- Gbrowse updated in CPAN
- Site 2.0 demo