Difference between revisions of "WebDev 2009.11.18-Agenda and Minutes"

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== 1. Administrative Update (Todd; 10 minutes) ==
 
== 1. Administrative Update (Todd; 10 minutes) ==
 +
 +
* Documentation re: Biomart; building server
 +
* Dev deadline WS208
  
 
== 2. Sign off on WS208 build (all; 5 minutes) ==
 
== 2. Sign off on WS208 build (all; 5 minutes) ==
 +
 +
* Running into GB issues with checking
 +
* The data is in -- will check again later this week
 +
* Inform LS if lib problems are encountered
  
 
== 3. Paralog display review (Norie; 10 minutes) ==
 
== 3. Paralog display review (Norie; 10 minutes) ==
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Track sharing on GB1 from modENCODE:
 
Track sharing on GB1 from modENCODE:
 
http://dev.wormbase.org/db/seq/gbrowse/c_elegans/
 
http://dev.wormbase.org/db/seq/gbrowse/c_elegans/
 +
 +
* Discussed the page above; running into GB1 lib problems?
 +
* GB2 needs to be updated by Peter R.
 +
* Some tracks need little ironing out
  
 
== 5. GB2 installation and debugging status (Abby & Xiaoqi; 10 minutes) ==
 
== 5. GB2 installation and debugging status (Abby & Xiaoqi; 10 minutes) ==
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GB2 on dev:
 
GB2 on dev:
 
http://dev.wormbase.org/db/gb2/gbrowse/c_elegans/
 
http://dev.wormbase.org/db/gb2/gbrowse/c_elegans/
 +
 +
* GB2 installed in the main dev site -- some troubleshooting
 +
* Working with config files
 +
* Plan:  Migrate to GB2 for WS209
  
 
== 6. Inline images via GB2 (Xiaoqi; 5 minutes) ==
 
== 6. Inline images via GB2 (Xiaoqi; 5 minutes) ==
 +
*gene/gene http://dev.wormbase.org:9004/db/gene/gene?name=WBGene00006763;class=Gene
 +
*gene/variation http://dev.wormbase.org:9004/db/gene/variation?name=e1196;class=Variation
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*gene/operon  http://dev.wormbase.org:9004/db/gene/operon?name=CEOP2468;class=Operon
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*seq/sequence http://dev.wormbase.org:9004/db/seq/sequence?name=JC8.10;class=Gene_name
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*
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*seq/protein: GB2 module will work
 +
 +
 +
* Work on incorporating an image map instead of just images.
 +
 +
* Synteny Browser -- Analyzing for install.  SM has put together an install package(?)
 +
* Compatibility with GB2 at this point?  Excercise caution in installing to avoid conflicts.
  
 
== 7. Open Table ==
 
== 7. Open Table ==

Latest revision as of 17:43, 18 November 2009

Agenda & Minutes

1. Administrative Update (Todd; 10 minutes)

  • Documentation re: Biomart; building server
  • Dev deadline WS208

2. Sign off on WS208 build (all; 5 minutes)

  • Running into GB issues with checking
  • The data is in -- will check again later this week
  • Inform LS if lib problems are encountered

3. Paralog display review (Norie; 10 minutes)

4. modENCODE integration & track display (Abby; 5 minutes)

Track sharing on GB1 from modENCODE: http://dev.wormbase.org/db/seq/gbrowse/c_elegans/

  • Discussed the page above; running into GB1 lib problems?
  • GB2 needs to be updated by Peter R.
  • Some tracks need little ironing out

5. GB2 installation and debugging status (Abby & Xiaoqi; 10 minutes)

GB2 on dev: http://dev.wormbase.org/db/gb2/gbrowse/c_elegans/

  • GB2 installed in the main dev site -- some troubleshooting
  • Working with config files
  • Plan: Migrate to GB2 for WS209

6. Inline images via GB2 (Xiaoqi; 5 minutes)


  • Work on incorporating an image map instead of just images.
  • Synteny Browser -- Analyzing for install. SM has put together an install package(?)
  • Compatibility with GB2 at this point? Excercise caution in installing to avoid conflicts.

7. Open Table