Difference between revisions of "WebDev 2009.11.11-Agenda and Minutes"

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(New page: = Agenda = == 1. Sanger visit review (Todd; 10 minutes) == == 2. Detail WS208 build status (Norie; 10 minutes) == == 3. modENCODE and GBrowse2 status (Abby; 10 minutes) == == 4. Devel...)
 
 
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== 1. Sanger visit review (Todd; 10 minutes) ==
 
== 1. Sanger visit review (Todd; 10 minutes) ==
 +
 +
* Worked on a large no. of things while there
 +
* AceDB work to produce GFF3 (with Ed Griffith)
 +
* Simplify the update pipeline -- MySQL dbs for GFF files
 +
* Sanger mirror put up-to-date
 +
* Migrate dump DB to Caltech
  
 
== 2. Detail WS208 build status (Norie; 10 minutes) ==
 
== 2. Detail WS208 build status (Norie; 10 minutes) ==
 +
 +
* data from Sanger installed
 +
* Staring testing soon
 +
* MySQL database for nBrowse
 +
* Paralog display; intersection of BP and MF
 +
* Porting Treefam maps over to paralog display
  
 
== 3. modENCODE and GBrowse2 status (Abby; 10 minutes) ==
 
== 3. modENCODE and GBrowse2 status (Abby; 10 minutes) ==
 +
http://dev.wormbase.org:9003/db/gb2/gbrowse/modencode/
 +
 +
* GBrowse2 working in personal dev site
 +
* Question on using GFF2 files still?  TH:Will also use for now
 +
* TH: A little bit of work was also done for modENCODE stuff
 +
* GB2 scheduled for WS209
 +
* TH: Abby to document GB2 install
 +
* TH: Abby to install in main dev server for WS209
 +
* Convert in earnest after WS208
 +
* Formatting config files
 +
* XX to add inline images
  
 
== 4. Development updates (Xiaoqi; 10 minutes) ==
 
== 4. Development updates (Xiaoqi; 10 minutes) ==
 +
 +
* Inline image conversion -- long term project
 +
* TH: Check gene page for inline image inclusion
 +
* TH: Also check for GB2 version of adding inline images, check of the history of the gene page CVS commits
  
 
== 5. 'Mart status (Zheng; 5 minutes) ==
 
== 5. 'Mart status (Zheng; 5 minutes) ==
 +
 +
* Finished WS200 Mart build
 +
* Two versions available: WS200 and 202
 +
* For WS204 Mart build -- go to Sanger (ftp.sanger.ac.uk) or TH will get data for him.
 +
* Working on some issues
  
 
== 6. Open Table ==
 
== 6. Open Table ==

Latest revision as of 18:00, 11 November 2009

Agenda

1. Sanger visit review (Todd; 10 minutes)

  • Worked on a large no. of things while there
  • AceDB work to produce GFF3 (with Ed Griffith)
  • Simplify the update pipeline -- MySQL dbs for GFF files
  • Sanger mirror put up-to-date
  • Migrate dump DB to Caltech

2. Detail WS208 build status (Norie; 10 minutes)

  • data from Sanger installed
  • Staring testing soon
  • MySQL database for nBrowse
  • Paralog display; intersection of BP and MF
  • Porting Treefam maps over to paralog display

3. modENCODE and GBrowse2 status (Abby; 10 minutes)

http://dev.wormbase.org:9003/db/gb2/gbrowse/modencode/

  • GBrowse2 working in personal dev site
  • Question on using GFF2 files still? TH:Will also use for now
  • TH: A little bit of work was also done for modENCODE stuff
  • GB2 scheduled for WS209
  • TH: Abby to document GB2 install
  • TH: Abby to install in main dev server for WS209
  • Convert in earnest after WS208
  • Formatting config files
  • XX to add inline images

4. Development updates (Xiaoqi; 10 minutes)

  • Inline image conversion -- long term project
  • TH: Check gene page for inline image inclusion
  • TH: Also check for GB2 version of adding inline images, check of the history of the gene page CVS commits

5. 'Mart status (Zheng; 5 minutes)

  • Finished WS200 Mart build
  • Two versions available: WS200 and 202
  • For WS204 Mart build -- go to Sanger (ftp.sanger.ac.uk) or TH will get data for him.
  • Working on some issues

6. Open Table