WebDev 2009.10.21-Agenda and Minutes

From WormBaseWiki
Jump to navigationJump to search


1. Administration (Todd, 5 minutes)

WS207 - in production
- some hardware problems with production nodes -> will resolve shortly
- working on things for Friday meeting (postponed)

2. WS207 Development progress, paralog display (Norie; 10 minutes)

  • Paralog sections to the orthology page
  • Table of paralogs:

gathered biological processes annotations
listed in terms of diff/similarities to the gene

  • Search algorithm for ontologies - diseases
  • TH: incorporate obj to disease: search by these terms
  • LS: Add treefam picture - link to txt (maybe mouseover to highlight paragraph)

3. nBrowse, pathway visualization progress (Xiaoqi; 10 minutes)

  • Created pathway page w/ related reactome & nemapath info
    • linked through function section on gene page
    • Bannon site still blocked by firewall
    • LS: beta test Cytoscape lite along with nBrowse
    • ND: will install nBrowse 1 since no installation package for nBrowse2
  • Updated bitbucket issues - TH will look at them

4. modENCODE migration progress (Abby; 10 minutes)

  • SAM/BAM data is displayed, using track sharing to show multiple tracks since each BAM file needs a separate config file
  • However, shared tracks always zoomed in

LS: will be fixed

  • TH: will move to GB2 for WS209 early Dec
  • Goal: have all modENCODE tracks on WormBase by data freeze via track sharing

5. WormMart status and timeline (Zheng; 10 minutes)

  • 195 - most recent build of WormMart
  • Will manually create 200 and 2004, will try scripting 205 to be fully automated
  • will put code for bioMart build in svn
  • TH: setting up machine for Mart - ZZ will send appropriate config info
  • Working on Chado migration