Difference between revisions of "WebDev 2009.10.21-Agenda and Minutes"
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== 1. Administration (Todd, 5 minutes) == | == 1. Administration (Todd, 5 minutes) == | ||
+ | WS207 - in production | ||
+ | * some hardware problems with production nodes -> will resolve shortly | ||
+ | * working on things for Friday meeting (postponed) | ||
== 2. WS207 Development progress, paralog display (Norie; 10 minutes) == | == 2. WS207 Development progress, paralog display (Norie; 10 minutes) == | ||
* Paralog sections to the orthology page | * Paralog sections to the orthology page | ||
− | * Table of paralogs | + | * Table of paralogs: |
− | * | + | ** gathered biological processes annotations<br> |
+ | ** listed in terms of diff/similarities to the gene | ||
+ | |||
+ | * Search algorithm for ontologies - diseases | ||
+ | * TH: incorporate obj to disease: search by these terms | ||
+ | * LS: Add treefam picture - link to txt (maybe mouseover to highlight paragraph) | ||
== 3. nBrowse, pathway visualization progress (Xiaoqi; 10 minutes) == | == 3. nBrowse, pathway visualization progress (Xiaoqi; 10 minutes) == | ||
+ | * Created pathway page w/ related reactome & nemapath info | ||
+ | ** linked through function section on gene page | ||
+ | ** Bannon site still blocked by firewall | ||
+ | ** LS: beta test Cytoscape lite along with nBrowse | ||
+ | ** ND: will install nBrowse 1 since no installation package for nBrowse2 | ||
+ | * Updated bitbucket issues - TH will look at them | ||
== 4. modENCODE migration progress (Abby; 10 minutes) == | == 4. modENCODE migration progress (Abby; 10 minutes) == | ||
+ | * SAM/BAM data is displayed, using track sharing to show multiple tracks since each BAM file needs a separate config file | ||
+ | * However, shared tracks always zoomed in | ||
+ | ** LS: will be fixed | ||
+ | * TH: will move to GB2 for WS209 early Dec | ||
+ | * Goal: have all modENCODE tracks on WormBase by data freeze via track sharing | ||
== 5. WormMart status and timeline (Zheng; 10 minutes) == | == 5. WormMart status and timeline (Zheng; 10 minutes) == | ||
+ | * 195 - most recent build of WormMart | ||
+ | * Will manually create 200 and 2004, will try scripting 205 to be fully automated | ||
+ | * will put code for bioMart build in svn | ||
+ | * TH: setting up machine for Mart - ZZ will send appropriate config info | ||
+ | * Working on Chado migration |
Latest revision as of 10:19, 22 October 2009
Contents
Agenda
1. Administration (Todd, 5 minutes)
WS207 - in production
- some hardware problems with production nodes -> will resolve shortly
- working on things for Friday meeting (postponed)
2. WS207 Development progress, paralog display (Norie; 10 minutes)
- Paralog sections to the orthology page
- Table of paralogs:
- gathered biological processes annotations
- listed in terms of diff/similarities to the gene
- gathered biological processes annotations
- Search algorithm for ontologies - diseases
- TH: incorporate obj to disease: search by these terms
- LS: Add treefam picture - link to txt (maybe mouseover to highlight paragraph)
3. nBrowse, pathway visualization progress (Xiaoqi; 10 minutes)
- Created pathway page w/ related reactome & nemapath info
- linked through function section on gene page
- Bannon site still blocked by firewall
- LS: beta test Cytoscape lite along with nBrowse
- ND: will install nBrowse 1 since no installation package for nBrowse2
- Updated bitbucket issues - TH will look at them
4. modENCODE migration progress (Abby; 10 minutes)
- SAM/BAM data is displayed, using track sharing to show multiple tracks since each BAM file needs a separate config file
- However, shared tracks always zoomed in
- LS: will be fixed
- TH: will move to GB2 for WS209 early Dec
- Goal: have all modENCODE tracks on WormBase by data freeze via track sharing
5. WormMart status and timeline (Zheng; 10 minutes)
- 195 - most recent build of WormMart
- Will manually create 200 and 2004, will try scripting 205 to be fully automated
- will put code for bioMart build in svn
- TH: setting up machine for Mart - ZZ will send appropriate config info
- Working on Chado migration