Difference between revisions of "WebDev 2009.06.16-Agenda and Minutes"
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Jump to navigationJump to search (New page: == 1. Administration (Todd, 5 minutes) == == 2. Describe OICR migration progress (Todd, 10 minutes) == See: * http://www.wormbase.org/wiki/index.php/OICR-Configuring_the_development_ma...) |
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See: | See: | ||
− | * | + | * [[OICR-Configuring_the_development_machine]] |
− | * | + | * [[Migrating_frozen_releases_to_OICR]] |
− | + | In migrating, reconciled four long-standing back burner issues: | |
+ | |||
+ | * localized libraries | ||
+ | * mod_perl2 | ||
+ | * apache2 | ||
+ | * GBrowse 2 | ||
+ | |||
+ | GBrowse2: | ||
+ | * LS: Check to make sure using preforked and not multi-threaded Apache. | ||
+ | * TH: finishing up migration of configuration files | ||
+ | |||
+ | * LS: Include feature from common elements | ||
+ | ** #include path/* // for example | ||
+ | |||
+ | Aggregator issues | ||
+ | * Custom wormbase gene aggregator not working | ||
+ | * LS: Bio::DB::SeqFeature? | ||
+ | * TH: Nope, Bio::DB::GFF | ||
+ | * Aggregator has to be associated with the database conf, not GBrowse.conf | ||
+ | |||
+ | tmpimages | ||
+ | * TH: available in GB1, used primarily for resolving backend machines generating gbrowse_img pics | ||
+ | * LS: now handled by apache config stanza | ||
+ | ** mapping from temporary URL space to physical space; adjust to do spacing | ||
== 3. modENCODE Update (Marc, Peter, Zheng; 30 minutes) == | == 3. modENCODE Update (Marc, Peter, Zheng; 30 minutes) == | ||
+ | |||
+ | Peter: | ||
+ | * Duplicated tracks - regular expression not capturing pattern appropriately | ||
+ | * Nicole working with Waterston on additional data sets | ||
+ | |||
+ | |||
+ | Marc: | ||
+ | |||
+ | Zheng: | ||
+ | WormMart and modENCODE BioMart | ||
+ | |||
+ | BioMart will have central port that will point to development server | ||
+ | |||
+ | * TH: Where will the database live? Do we need to host? | ||
+ | * '''ZZ: Will discuss with Arek''' | ||
== 4. Open Table == | == 4. Open Table == | ||
+ | |||
+ | NO CONFERENCE CALL NEXT WEEK DUE TO THE INTERNATIONAL WORM MEETING |
Latest revision as of 09:38, 1 July 2009
Contents
1. Administration (Todd, 5 minutes)
2. Describe OICR migration progress (Todd, 10 minutes)
See:
In migrating, reconciled four long-standing back burner issues:
- localized libraries
- mod_perl2
- apache2
- GBrowse 2
GBrowse2:
- LS: Check to make sure using preforked and not multi-threaded Apache.
- TH: finishing up migration of configuration files
- LS: Include feature from common elements
- #include path/* // for example
Aggregator issues
- Custom wormbase gene aggregator not working
- LS: Bio::DB::SeqFeature?
- TH: Nope, Bio::DB::GFF
- Aggregator has to be associated with the database conf, not GBrowse.conf
tmpimages
- TH: available in GB1, used primarily for resolving backend machines generating gbrowse_img pics
- LS: now handled by apache config stanza
** mapping from temporary URL space to physical space; adjust to do spacing
3. modENCODE Update (Marc, Peter, Zheng; 30 minutes)
Peter:
- Duplicated tracks - regular expression not capturing pattern appropriately
- Nicole working with Waterston on additional data sets
Marc:
Zheng: WormMart and modENCODE BioMart
BioMart will have central port that will point to development server
- TH: Where will the database live? Do we need to host?
- ZZ: Will discuss with Arek
4. Open Table
NO CONFERENCE CALL NEXT WEEK DUE TO THE INTERNATIONAL WORM MEETING