Difference between revisions of "WS280 Models.wrm"

From WormBaseWiki
Jump to navigationJump to search
 
Line 1: Line 1:
 +
The WS280 release contains three model changes, described in more detail here:
 +
 
https://github.com/WormBase/wormbase-pipeline/issues?q=milestone%3AWS280+label%3AMODELS
 
https://github.com/WormBase/wormbase-pipeline/issues?q=milestone%3AWS280+label%3AMODELS
  
 +
Briefly, the changes are:
 +
 +
A change to contain the results of Variant Effect Predictor, which is a new analysis we are running, and which allows us to see the molecular consequences of a variation, for example a mutation can be silent, frameshift, introduce a stop codon.
 
* WB VEP tag addition into the ?Variation class
 
* WB VEP tag addition into the ?Variation class
  
 +
The species model has been extended to contain more evidence and reference fields, which will help our curators.
 
* WS280 ?Species model additions
 
* WS280 ?Species model additions
  
 +
To accommodate the new Located_sequence_feature tag introduced by the SO consortia. A Located_sequence_feature is "A biological feature that can be attributed to a region of biological sequence.", and we can now curate those into the database.
 
* ?SO_term Located_sequence_feature addition
 
* ?SO_term Located_sequence_feature addition

Latest revision as of 14:56, 18 February 2021

The WS280 release contains three model changes, described in more detail here:

https://github.com/WormBase/wormbase-pipeline/issues?q=milestone%3AWS280+label%3AMODELS

Briefly, the changes are:

A change to contain the results of Variant Effect Predictor, which is a new analysis we are running, and which allows us to see the molecular consequences of a variation, for example a mutation can be silent, frameshift, introduce a stop codon.

  • WB VEP tag addition into the ?Variation class

The species model has been extended to contain more evidence and reference fields, which will help our curators.

  • WS280 ?Species model additions

To accommodate the new Located_sequence_feature tag introduced by the SO consortia. A Located_sequence_feature is "A biological feature that can be attributed to a region of biological sequence.", and we can now curate those into the database.

  • ?SO_term Located_sequence_feature addition