Difference between revisions of "WS280 Models.wrm"
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+ | The WS280 release contains three model changes, described in more detail here: | ||
+ | |||
https://github.com/WormBase/wormbase-pipeline/issues?q=milestone%3AWS280+label%3AMODELS | https://github.com/WormBase/wormbase-pipeline/issues?q=milestone%3AWS280+label%3AMODELS | ||
+ | Briefly, the changes are: | ||
+ | |||
+ | A change to contain the results of Variant Effect Predictor, which is a new analysis we are running, and which allows us to see the molecular consequences of a variation, for example a mutation can be silent, frameshift, introduce a stop codon. | ||
* WB VEP tag addition into the ?Variation class | * WB VEP tag addition into the ?Variation class | ||
+ | The species model has been extended to contain more evidence and reference fields, which will help our curators. | ||
* WS280 ?Species model additions | * WS280 ?Species model additions | ||
+ | To accommodate the new Located_sequence_feature tag introduced by the SO consortia. A Located_sequence_feature is "A biological feature that can be attributed to a region of biological sequence.", and we can now curate those into the database. | ||
* ?SO_term Located_sequence_feature addition | * ?SO_term Located_sequence_feature addition |
Latest revision as of 14:56, 18 February 2021
The WS280 release contains three model changes, described in more detail here:
https://github.com/WormBase/wormbase-pipeline/issues?q=milestone%3AWS280+label%3AMODELS
Briefly, the changes are:
A change to contain the results of Variant Effect Predictor, which is a new analysis we are running, and which allows us to see the molecular consequences of a variation, for example a mutation can be silent, frameshift, introduce a stop codon.
- WB VEP tag addition into the ?Variation class
The species model has been extended to contain more evidence and reference fields, which will help our curators.
- WS280 ?Species model additions
To accommodate the new Located_sequence_feature tag introduced by the SO consortia. A Located_sequence_feature is "A biological feature that can be attributed to a region of biological sequence.", and we can now curate those into the database.
- ?SO_term Located_sequence_feature addition