Difference between revisions of "WS247 Models.wrm"
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== Model changes for WS246 == | == Model changes for WS246 == | ||
− | + | == GO_annotation class - Kimberly == | |
Introduction of this new class to capture Gene::GO associateions and additional meta data associated with a curation event. | Introduction of this new class to capture Gene::GO associateions and additional meta data associated with a curation event. | ||
− | + | == Feature - M.A.== | |
Can we remove Annotation and Defined_by_author | Can we remove Annotation and Defined_by_author | ||
− | + | == Tag additions for connecting ?Picture to ?WBProcess (Topic) == | |
Add: | Add: | ||
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Picture ?Picture XREF WBProcess #Evidence | Picture ?Picture XREF WBProcess #Evidence | ||
− | + | == Unique -> UNIQUE housekeeping change == | |
Corresponding_transgene Unique ?Transgene XREF Corresponding_variation | Corresponding_transgene Unique ?Transgene XREF Corresponding_variation | ||
− | + | == Expr_patter - Daniela == | |
I would like to add | I would like to add | ||
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this will allow to map graphs for expression for remanei, briggsae and japonica to 'gene' through already existing probe-to-genome mappings | this will allow to map graphs for expression for remanei, briggsae and japonica to 'gene' through already existing probe-to-genome mappings | ||
− | + | == Expr_patter 2 - Daniela == | |
I would also like to add a Species tag in the Expr_pattern class | I would also like to add a Species tag in the Expr_pattern class | ||
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Species UNIQUE ?Species | Species UNIQUE ?Species | ||
− | + | == Wen has two model proposals for WS247: == | |
1. Can we move Microarray_results tag from under "Experimental_info" to under "Molecular_info"? | 1. Can we move Microarray_results tag from under "Experimental_info" to under "Molecular_info"? |
Revision as of 11:21, 13 November 2014
Contents
Model changes for WS246
GO_annotation class - Kimberly
Introduction of this new class to capture Gene::GO associateions and additional meta data associated with a curation event.
Feature - M.A.
Can we remove Annotation and Defined_by_author
Tag additions for connecting ?Picture to ?WBProcess (Topic)
Add:
?Picture Depict WBProcess ?WBProcess XREF Picture
and change:
?WBProcess Picture ?Picture #Evidence
to:
?WBProcess Picture ?Picture XREF WBProcess #Evidence
Unique -> UNIQUE housekeeping change
Corresponding_transgene Unique ?Transgene XREF Corresponding_variation
Expr_patter - Daniela
I would like to add
Microarray_results ?Microarray_results XREF Expr_Pattern
to the Expr_pattern class
between Expression_cluster ?Expression_cluster XREF Expr_pattern and Pattern ?Text
this will allow to map graphs for expression for remanei, briggsae and japonica to 'gene' through already existing probe-to-genome mappings
Expr_patter 2 - Daniela
I would also like to add a Species tag in the Expr_pattern class
Species UNIQUE ?Species
Wen has two model proposals for WS247:
1. Can we move Microarray_results tag from under "Experimental_info" to under "Molecular_info"?
This tag used to store microarray data, but now it is only used to specify probe names corresponding to this gene. It is better staying under super tag "Molecular_info". This model change should not affect database build or website display.
2. Under ?Expression_cluster model
Please change:
Regulation Regulated_by_gene ?Gene // Wen WS228 Regulated_by_treatment Text // Wen WS228 Regulated_by_molecule ?Molecule // Wen WS228
into
Regulation Regulated_by_gene ?Gene XREF Regulate_expr_cluster Regulated_by_treatment Text Regulated_by_molecule ?Molecule XREF Regulate_expr_cluster
Corresponding XREF already exist in ?Gene and ?Molecule class, the XREFs in Expression_cluster were probably forgotten when I proposed them for WS228.