Difference between revisions of "WS247 Models.wrm"
(Created page with "== Model changes for WS246 == * Feature - M.A. Can we remove Annotation and Defined_by_author * Tag additions for connecting ?Picture to ?WBProcess (Topic) Add: ?Picture...") |
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Add: | Add: | ||
− | ?Picture | + | ?Picture |
Depict WBProcess ?WBProcess XREF Picture | Depict WBProcess ?WBProcess XREF Picture | ||
and change: | and change: | ||
− | ?WBProcess | + | ?WBProcess |
Picture ?Picture #Evidence | Picture ?Picture #Evidence | ||
to: | to: | ||
− | ?WBProcess | + | ?WBProcess |
Picture ?Picture XREF WBProcess #Evidence | Picture ?Picture XREF WBProcess #Evidence | ||
* Unique -> UNIQUE housekeeping change | * Unique -> UNIQUE housekeeping change | ||
− | Corresponding_transgene Unique ?Transgene XREF Corresponding_variation | + | Corresponding_transgene Unique ?Transgene XREF Corresponding_variation |
* Expr_patter - Daniela | * Expr_patter - Daniela | ||
Line 30: | Line 30: | ||
I would like to add | I would like to add | ||
− | Microarray_results ?Microarray_results XREF Expr_Pattern | + | Microarray_results ?Microarray_results XREF Expr_Pattern |
to the Expr_pattern class | to the Expr_pattern class | ||
− | between | + | between |
− | Expression_cluster ?Expression_cluster XREF Expr_pattern | + | Expression_cluster ?Expression_cluster XREF Expr_pattern |
− | and | + | and |
− | Pattern ?Text | + | Pattern ?Text |
this will allow to map graphs for expression for remanei, briggsae and japonica to 'gene' through already existing probe-to-genome mappings | this will allow to map graphs for expression for remanei, briggsae and japonica to 'gene' through already existing probe-to-genome mappings | ||
Line 45: | Line 45: | ||
I would also like to add a Species tag in the Expr_pattern class | I would also like to add a Species tag in the Expr_pattern class | ||
− | Species UNIQUE ?Species | + | Species UNIQUE ?Species |
* Wen has two model proposals for WS247: | * Wen has two model proposals for WS247: | ||
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− | Regulation Regulated_by_gene ?Gene // Wen WS228 | + | Regulation Regulated_by_gene ?Gene // Wen WS228 |
− | + | Regulated_by_treatment Text // Wen WS228 | |
− | + | Regulated_by_molecule ?Molecule // Wen WS228 | |
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Regulation Regulated_by_gene ?Gene XREF Regulate_expr_cluster | Regulation Regulated_by_gene ?Gene XREF Regulate_expr_cluster | ||
− | + | Regulated_by_treatment Text | |
− | + | Regulated_by_molecule ?Molecule XREF Regulate_expr_cluster | |
Corresponding XREF already exist in ?Gene and ?Molecule class, the XREFs in Expression_cluster were probably forgotten when I proposed them for WS228. | Corresponding XREF already exist in ?Gene and ?Molecule class, the XREFs in Expression_cluster were probably forgotten when I proposed them for WS228. |
Revision as of 09:42, 13 November 2014
Model changes for WS246
- Feature - M.A.
Can we remove Annotation and Defined_by_author
- Tag additions for connecting ?Picture to ?WBProcess (Topic)
Add:
?Picture Depict WBProcess ?WBProcess XREF Picture
and change:
?WBProcess Picture ?Picture #Evidence
to:
?WBProcess Picture ?Picture XREF WBProcess #Evidence
- Unique -> UNIQUE housekeeping change
Corresponding_transgene Unique ?Transgene XREF Corresponding_variation
- Expr_patter - Daniela
I would like to add
Microarray_results ?Microarray_results XREF Expr_Pattern
to the Expr_pattern class
between Expression_cluster ?Expression_cluster XREF Expr_pattern and Pattern ?Text
this will allow to map graphs for expression for remanei, briggsae and japonica to 'gene' through already existing probe-to-genome mappings
- Expr_patter 2 - Daniela
I would also like to add a Species tag in the Expr_pattern class
Species UNIQUE ?Species
- Wen has two model proposals for WS247:
1. Can we move Microarray_results tag from under "Experimental_info" to under "Molecular_info"?
This tag used to store microarray data, but now it is only used to specify probe names corresponding to this gene. It is better staying under super tag "Molecular_info". This model change should not affect database build or website display.
2. Under ?Expression_cluster model
Please change:
Regulation Regulated_by_gene ?Gene // Wen WS228 Regulated_by_treatment Text // Wen WS228 Regulated_by_molecule ?Molecule // Wen WS228
into
Regulation Regulated_by_gene ?Gene XREF Regulate_expr_cluster Regulated_by_treatment Text Regulated_by_molecule ?Molecule XREF Regulate_expr_cluster
Corresponding XREF already exist in ?Gene and ?Molecule class, the XREFs in Expression_cluster were probably forgotten when I proposed them for WS228.