Difference between revisions of "WS247 Models.wrm"

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(Created page with "== Model changes for WS246 == * Feature - M.A. Can we remove Annotation and Defined_by_author * Tag additions for connecting ?Picture to ?WBProcess (Topic) Add: ?Picture...")
 
Line 9: Line 9:
 
Add:
 
Add:
  
?Picture
+
?Picture
 
   Depict  WBProcess  ?WBProcess  XREF  Picture
 
   Depict  WBProcess  ?WBProcess  XREF  Picture
  
 
and change:
 
and change:
  
?WBProcess
+
?WBProcess
 
   Picture  ?Picture  #Evidence
 
   Picture  ?Picture  #Evidence
  
 
to:
 
to:
  
?WBProcess
+
?WBProcess
 
   Picture  ?Picture  XREF  WBProcess  #Evidence  
 
   Picture  ?Picture  XREF  WBProcess  #Evidence  
  
 
* Unique -> UNIQUE housekeeping change
 
* Unique -> UNIQUE housekeeping change
  
Corresponding_transgene Unique ?Transgene XREF Corresponding_variation
+
Corresponding_transgene Unique ?Transgene XREF Corresponding_variation
  
 
* Expr_patter - Daniela
 
* Expr_patter - Daniela
Line 30: Line 30:
 
I would like to add
 
I would like to add
  
Microarray_results ?Microarray_results XREF Expr_Pattern
+
Microarray_results ?Microarray_results XREF Expr_Pattern
  
 
to the Expr_pattern class
 
to the Expr_pattern class
  
between
+
between
Expression_cluster ?Expression_cluster XREF Expr_pattern
+
Expression_cluster ?Expression_cluster XREF Expr_pattern
and        
+
and        
Pattern ?Text
+
Pattern ?Text
  
 
this will allow to map graphs for expression for remanei, briggsae and japonica to 'gene' through already existing probe-to-genome mappings
 
this will allow to map graphs for expression for remanei, briggsae and japonica to 'gene' through already existing probe-to-genome mappings
Line 45: Line 45:
 
I would also like to add a Species tag in the Expr_pattern class
 
I would also like to add a Species tag in the Expr_pattern class
  
Species UNIQUE ?Species
+
Species UNIQUE ?Species
  
 
*  Wen has two model proposals for WS247:
 
*  Wen has two model proposals for WS247:
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Regulation  Regulated_by_gene ?Gene                  // Wen WS228
+
Regulation  Regulated_by_gene ?Gene                  // Wen WS228
                  Regulated_by_treatment Text                // Wen WS228
+
              Regulated_by_treatment Text                // Wen WS228
                  Regulated_by_molecule ?Molecule        // Wen WS228
+
              Regulated_by_molecule ?Molecule        // Wen WS228
  
  
Line 68: Line 68:
  
 
  Regulation  Regulated_by_gene ?Gene  XREF Regulate_expr_cluster
 
  Regulation  Regulated_by_gene ?Gene  XREF Regulate_expr_cluster
                  Regulated_by_treatment Text
+
              Regulated_by_treatment Text
                  Regulated_by_molecule ?Molecule XREF Regulate_expr_cluster
+
              Regulated_by_molecule ?Molecule XREF Regulate_expr_cluster
  
  
 
Corresponding XREF already exist in ?Gene and ?Molecule class, the XREFs in Expression_cluster were probably forgotten when I proposed them for WS228.
 
Corresponding XREF already exist in ?Gene and ?Molecule class, the XREFs in Expression_cluster were probably forgotten when I proposed them for WS228.

Revision as of 09:42, 13 November 2014

Model changes for WS246

  • Feature - M.A.

Can we remove Annotation and Defined_by_author

  • Tag additions for connecting ?Picture to ?WBProcess (Topic)

Add:

?Picture
  Depict  WBProcess  ?WBProcess  XREF  Picture

and change:

?WBProcess
  Picture  ?Picture  #Evidence

to:

?WBProcess
  Picture  ?Picture  XREF  WBProcess  #Evidence 
  • Unique -> UNIQUE housekeeping change
Corresponding_transgene Unique ?Transgene XREF Corresponding_variation
  • Expr_patter - Daniela

I would like to add

Microarray_results ?Microarray_results XREF Expr_Pattern

to the Expr_pattern class

between
Expression_cluster ?Expression_cluster XREF Expr_pattern
and	      
Pattern ?Text

this will allow to map graphs for expression for remanei, briggsae and japonica to 'gene' through already existing probe-to-genome mappings

  • Expr_patter 2 - Daniela

I would also like to add a Species tag in the Expr_pattern class

Species UNIQUE ?Species
  • Wen has two model proposals for WS247:

1. Can we move Microarray_results tag from under "Experimental_info" to under "Molecular_info"?

This tag used to store microarray data, but now it is only used to specify probe names corresponding to this gene. It is better staying under super tag "Molecular_info". This model change should not affect database build or website display.


2. Under ?Expression_cluster model

Please change:


Regulation   Regulated_by_gene ?Gene                   // Wen WS228
             Regulated_by_treatment Text                // Wen WS228
             Regulated_by_molecule ?Molecule        // Wen WS228


into


Regulation   Regulated_by_gene ?Gene  XREF Regulate_expr_cluster
             Regulated_by_treatment Text
             Regulated_by_molecule ?Molecule XREF Regulate_expr_cluster


Corresponding XREF already exist in ?Gene and ?Molecule class, the XREFs in Expression_cluster were probably forgotten when I proposed them for WS228.