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WS238 Models.wrm - Revision history
2024-03-29T09:23:29Z
Revision history for this page on the wiki
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https://wiki.wormbase.org/index.php?title=WS238_Models.wrm&diff=18359&oldid=prev
Pdavis: /* Strain change - M.A. */
2013-05-21T09:58:56Z
<p><span dir="auto"><span class="autocomment">Strain change - M.A.</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 09:58, 21 May 2013</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Removal of the additional Unique tag in this branch</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Removal of the additional Unique tag in this branch <ins class="diffchange diffchange-inline">- ERROR fix</ins></div></td></tr>
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Pdavis
https://wiki.wormbase.org/index.php?title=WS238_Models.wrm&diff=18358&oldid=prev
Pdavis: Created page with '__TOC__ <b> == General housekeeping == </b> === None === <b> == Curator Models proposals == </b> ===Removal of Human_disease_relevance from ?Gene - Ranjana === <pre> < Hu…'
2013-05-21T09:57:09Z
<p>Created page with '__TOC__ <b> == General housekeeping == </b> === None === <b> == Curator Models proposals == </b> ===Removal of Human_disease_relevance from ?Gene - Ranjana === <pre> < Hu…'</p>
<p><b>New page</b></p><div>__TOC__<br />
<b><br />
== General housekeeping ==<br />
</b><br />
=== None ===<br />
<br />
<b><br />
== Curator Models proposals ==<br />
</b><br />
===Removal of Human_disease_relevance from ?Gene - Ranjana ===<br />
<br />
<pre><br />
< Human_disease_relevance ?Text #Evidenc // Ranjana [110601 pad]<br />
</pre><br />
<br />
===Historical Gene additions - Chris===<br />
<br />
Caltech would like to only maintain primary curated data and update to the current WBGene when dumping data for upload<br />
<br />
To accomplish this the following tag structure was added to multiple classes.<br />
<br />
*?Interaction<br />
*?Expr_pattern<br />
*?Antibody<br />
*?Transgene<br />
*?WBProcess <br />
<br />
<pre><br />
> Historical_gene ?Gene #Evidence<br />
</pre><br />
<br />
Other tag changes to accommodate the change<br />
<br />
* #Interactor_info<br />
------------------<br />
<pre><br />
> Inferred_automatically Text // a script has updated this connection<br />
</pre><br />
<br />
* ?Expr_pattern<br />
---------------<br />
<pre><br />
< ?Expr_pattern Expression_of Gene ?Gene XREF Expr_pattern<br />
> ?Expr_pattern Expression_of Gene ?Gene XREF Expr_pattern #Evidence<br />
</pre><br />
<br />
* ?Antibody<br />
-----------<br />
<pre><br />
< Gene ?Gene XREF Antibody<br />
> Gene ?Gene XREF Antibody #Evidence<br />
</pre><br />
<br />
* ?Transgene<br />
------------<br />
<pre><br />
< Promoter Driven_by_gene ?Gene XREF Drives_transgene // eventually change this tag to promoter_gene<br />
> Promoter Driven_by_gene ?Gene XREF Drives_transgene #Evidence // eventually change this tag to promoter_gene<br />
< Gene ?Gene XREF Transgene_product Text<br />
> Gene ?Gene XREF Transgene_product #Evidence <br />
< 3_UTR ?Gene<br />
> 3_UTR ?Gene #Evidence<br />
</pre><br />
<br />
* #Evidence hash <br />
-----------<br />
<br />
Addition to supplement historical gene.<br />
<pre><br />
> Remark ?Text<br />
</pre><br />
<br />
=== Strain change - M.A.===<br />
<br />
Removal of the additional Unique tag in this branch<br />
<pre><br />
< Elevation UNIQUE Unique Float #Position_confidence // Elevation above sea level.<br />
> Elevation UNIQUE Float #Position_confidence // Elevation above sea level.<br />
</pre><br />
<br />
=== ?Variation - M.A.===<br />
<pre><br />
< Strain ?Strain XREF Variation<br />
> Strain ?Strain XREF Variation #Evidence<br />
</pre><br />
<br />
<br />
=== Feature/Variation - M.A./Gary W. ===<br />
Removal of Text from this as it wasn't used/needed.<br />
<pre><br />
< Source_location UNIQUE Int UNIQUE ?Sequence UNIQUE Int UNIQUE Int UNIQUE Text #Evidence <br />
> Source_location UNIQUE Int UNIQUE ?Sequence UNIQUE Int UNIQUE Int UNIQUE #Evidence<br />
</pre></div>
Pdavis