WS233 Models.wrm

Model Changes

This cycle we see a number of model changes proposed by curators:

Michael:

?Strain

   Isolation  Picture ?Picture

Daniela:

?Life _stage

   Public_name UNIQUE Text

Kevin:

?PCR_product

      Mapping_primers Left_mapping_primer UNIQUE Text
                                  Right_mapping_primer UNIQUE Text

Unambiguous storage of primers used in the experiment.

Raymond:

?Anatomy_term

  Child   CELL_c         ?Anatomy_term     XREF CELL_p
          XUNION_OF_c    ?Anatomy_term     XREF XUNION_OF_p
  Parent  CELL_p         ?Anatomy_term     XREF CELL_c
          XUNION_OF_p    ?Anatomy_term     XREF XUNION_OF_c

Chris:

?RNAi

   -D Author

#Interactor_info

                      Cis_regulated  //existing tag
              Intragenic_effector_variation   ?Variation   XREF   Interactor // New tag
              Intragenic_affected_variation   ?Variation   XREF   Interactor // New tag

?Interaction

       Interaction_phenotype ?Phenotype XREF Interaction //existing tag
       Unaffiliated_variation   ?Variation // New tag
       Unaffiliated_transgene   ?Transgene // New tag
       Unaffiliated_antibody    ?Antibody // New tag
       Unaffiliated_expr_pattern   ?Expr_pattern // New tag
       WBProcess ?WBProcess XREF Interaction    //existing tag

   Interactor Rearrangement ?Rearrangement XREF Interactor #Interactor_info

   PCR_interactor - remove UNIQUE
   Sequence_interactor - remove UNIQUE

Sequence of the interacting gene or protein

?Transgene

   Reporter 3_UTR ?Gene

?Rearrangement

   Interactor ?Interaction XREF Rearrangement

House keeping changes to:

?Paper

Species ?Species #Evidence

Added non-unique species connectivity so that papers can be sorted by species.

?Process

Summary ?Text #Evidence

Added to store summary display details and evidence tracking.

Public_name

Again a text addition for display purposes.

Pathway DB_info Database ?Database ?Database_field ?Accession_number

Can be used for any pathway db with unique accessionIDs