Difference between revisions of "WS228 Models.wrm"
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Latest revision as of 13:31, 19 August 2011
Contents
Models Tagged for WS228
This cycle we see 4 simple changes/additions and the re-working of the Expression_cluster class.
Model Changes
Additions:
?Gene ----- Regulate_expr_cluster ?Expression_cluster XREF Regulated_by_gene
?Microarray_experiment ---------------------- Expression_cluster ?Expression_cluster XREF Microarray_experiment
#Homology_type -------------- COG //eggNOG - COG cluster
?Variation ---------- Readthrough Text #Evidence
#Molecular_change ----------------- Readthrough Text #Evidence
?Analysis --------- Expression_cluster ?Expression_cluster XREF Analysis
?Molecule --------- Regulate_expr_cluster ?Expression_cluster XREF Regulated_by_molecule
Changes:
?CDS ---- Start_not_found Int Start_not_found UNIQUE Int
?Transcript ----------- u21RNA UNIQUE Text piRNA UNIQUE Text
Reworked:
Mainly additions with the introduction of some top level tags.
Based_on_WB_Release Int //Wen - to identify clusters not mapped if authors did not provide probe information.
Attribute_of Microarray_experiment ?Microarray_experiment XREF Expression_cluster //Wen
Analysis ?Analysis XREF Expression_cluster //Wen, for cluster obtained from RNAseq or Tiling array
Regulation Regulated_by_gene ?Gene //Wen WS228
Regulated_by_treatment Text //Wen WS228
Regulated_by_molecule ?Molecule //Wen WS228
Associated_with Life_stage ?Life_stage //Wen WS228
GO_term ?GO_term //Wen WS228
