WS227 Models.wrm

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Models Tagged for WS229

This cycle we see a number of changes/additions to the core models file.

Model Changes

-D denotes removal of tag.



?Map Transgene ?Transgene XREF Map Transgene ?Transgene //sdm added to display gmaps //removed XREF ky 2011 -D XREF Map


?Gene DB_info Database ?Database ?Database_field ?Accession_number Text //For Darin genbank genpep ids Human_disease_relevance ?Text #Evidence // Ranjana [110601 pad]


?Rearrangement Introgression


?Species removal of majority of tags with some additions.


?Sequence Checksum


  1. Splice_confirmation

RNASeq ?Analysis Int Mass_spec ?Mass_spec_peptide




/////////////////////////////////////////////////////////////////////////// // New class: Sequence_collection // holds a collection of sequences and some descriptions ///////////////////////////////////////////////////////////////////////////

?Sequence_collection Origin Evidence #Evidence Name ?Text // name that the author gave this collection Species UNIQUE ?Species Strain UNIQUE ?Strain Laboratory ?Laboratory Database ?Database ?Database_field ?Accession_number History First_WS_release Int // first WormBase release this assembly was used Latest_WS_release Int // latest release where it was used Supercedes UNIQUE ?Sequence_collection XREF Superceded_by Superceded_by UNIQUE ?Sequence_collection XREF Supercedes Remark ?Text Status UNIQUE Live #Evidence Suppressed #Evidence Dead #Evidence Sequences ?Sequence


?Homology_group simplification by generating #Homology_type removal of HOPS_group and RIO_group

  1. Homology_type KOG
              TWOG
              FOG
              LSE
              NOG   //eggNOG - standard cluster
              euNOG //eggNOG - eukaryote cluster
              meNOG //eggNOG - metazoan cluster

?Feature Defined_by_analysis ?Analysis Int Int addition


?Transgene Significant modifications and cleanup. See CVS diff


?Movie -D Transgene ?Transgene XREF Movie


?Gene -D Rescued_by_transgene ?Transgene


?Person

    Affiliation Text // used for storing institute affiliations that aren't in their Address

  1. Address
     Fax           Text

?Molecule

    Rearrangement  ?Rearrangement  ?Phenotype  #Evidence  //KY [110602 pad]