WBGene information and status pipeline
From WormBaseWiki
Jump to navigationJump to searchAceDB tag | Postgres table | Current - Nameserver nightly dump | Current - WS bimonthly release | Future - Geneace nightly dump | Future - WS bimonthly release | Use - Paper or meeting abstract gene connection | Use - OA data type curation | Use - Dumping scripts | Use - Protein2GO data conversion | Comment | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
WBGene identifier | gin_wbgene | Yes | Yes | Yes | Yes | Yes | |||||||||||||
CGC_name | gin_locus | Yes | Yes | Yes | Yes | No | |||||||||||||
Other_name | gin_synonyms | No | Yes | Yes | No | Yes | Yes | No | |||||||||||
Sequence_name | gin_seqname | Yes | Yes | Yes | Yes | No | |||||||||||||
Public_name | gin_? | Yes (but only when no CGC_name or Sequence_name) | Don't need (Public_name also in Other_name - confirm this is always the case) | Not if also in Other_name | Not if also in Other_name | Not if also in Other_name | No | Could remove this table, but need to confirm if any scripts look at Public_name but not Other_name (I doubt it, but we should check) | |||||||||||
Molecular_name | gin_molname | No | Yes | No | Yes | Yes | No | Maybe | |||||||||||
Status | gin_dead | Yes | Yes | Yes | Yes | Yes | Yes | ||||||||||||
Merged_into | gin_dead | No | Yes | Yes | No | Historical_gene tag? | - | Acquires_merge | ? |