Difference between revisions of "WBGene information and status pipeline"
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Revision as of 15:32, 20 September 2013
| AceDB tag | Postgres table | Current - Nameserver nightly dump | Current - WS bimonthly release | Future - Geneace nightly dump | Future - WS bimonthly release | Use - Paper or meeting abstract gene connection | Use - OA data type curation | Use - Dumping scripts | Use - Protein2GO data conversion | Comment | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| WBGene identifier | gin_wbgene | Yes | Yes | Yes | Yes | Yes | |||||||||||||
| CGC_name | gin_locus | Yes | Yes | Yes | Yes | No | |||||||||||||
| Other_name | gin_synonyms | No | Yes | Yes | No | Yes | Yes | No | |||||||||||
| Sequence_name | gin_seqname | Yes | Yes | Yes | Yes | No | |||||||||||||
| Public_name | gin_? | Yes (but only when no CGC_name or Sequence_name) | Don't need (Public_name also in Other_name - confirm this is always the case) | Not if also in Other_name | Not if also in Other_name | Not if also in Other_name | No | Could remove this table, but need to confirm if any scripts look at Public_name but not Other_name (I doubt it, but we should check) | |||||||||||
| Molecular_name | gin_molname | No | Yes | No | Yes | Yes | No | Maybe | |||||||||||
| Status | gin_dead | Yes | Yes | Yes | Yes | Yes | Yes | ||||||||||||
| Merged_into | gin_dead | No | Yes | Yes | No | Historical_gene tag? | - | Acquires_merge | ? |
