Difference between revisions of "WBGene information and status pipeline"
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Jump to navigationJump to search| Line 62: | Line 62: | ||
| Public_name | | Public_name | ||
| gin_? | | gin_? | ||
| − | | Yes (but only when | + | | Yes (but only when no CGC_name or Sequence_name) |
| | | | ||
| Don't need (Public_name also in Other_name - confirm this is ''always'' the case) | | Don't need (Public_name also in Other_name - confirm this is ''always'' the case) | ||
Revision as of 15:16, 20 September 2013
| AceDB tag | Postgres table | Current - Nameserver nightly dump | Current - WS bimonthly release | Future - Geneace nightly dump | Future - WS bimonthly release | Use - Paper or meeting abstract gene connection | Use - OA data type curation | Use - Dumping scripts | Use - Protein2GO data conversion | Comment |
|---|---|---|---|---|---|---|---|---|---|---|
| WBGene identifier | gin_wbgene | Yes | Yes | Yes | Yes | Yes | ||||
| CGC_name | gin_locus | Yes | Yes | Yes | Yes | No | ||||
| Other_name | gin_synonyms | No | Yes | Yes | No | Yes | Yes | No | ||
| Sequence_name | gin_seqname | Yes | Yes | Yes | Yes | No | ||||
| Public_name | gin_? | Yes (but only when no CGC_name or Sequence_name) | Don't need (Public_name also in Other_name - confirm this is always the case) | Not if also in Other_name | Not if also in Other_name | Not if also in Other_name | No | Could remove this table, but need to confirm if any scripts look at Public_name but not Other_name (I doubt it, but we should check) | ||
| Status | gin_dead | Yes | Yes | Yes | Yes | Yes |
