Difference between revisions of "WBGene information and status pipeline"
From WormBaseWiki
Jump to navigationJump to search| Line 10: | Line 10: | ||
!Use - Dumping scripts | !Use - Dumping scripts | ||
!Use - Protein2GO data conversion | !Use - Protein2GO data conversion | ||
| + | !Comment | ||
|- | |- | ||
| WBGene identifier | | WBGene identifier | ||
| Line 21: | Line 22: | ||
| | | | ||
| Yes | | Yes | ||
| + | | | ||
|- | |- | ||
| CGC_name | | CGC_name | ||
| Line 32: | Line 34: | ||
| | | | ||
| No | | No | ||
| + | | | ||
|- | |- | ||
| Other_name | | Other_name | ||
| Line 43: | Line 46: | ||
| | | | ||
| No | | No | ||
| + | | | ||
|- | |- | ||
| Sequence_name | | Sequence_name | ||
| Line 54: | Line 58: | ||
| | | | ||
| No | | No | ||
| + | | | ||
|- | |- | ||
| Public_name | | Public_name | ||
| Line 64: | Line 69: | ||
| Not if also in Other_name | | Not if also in Other_name | ||
| Not if also in Other_name | | Not if also in Other_name | ||
| − | | | + | | No |
| + | | Could remove this table, but need to confirm if any scripts look at Public_name but not Other_name (I doubt it, but we should check) | ||
|- | |- | ||
|} | |} | ||
Revision as of 15:12, 20 September 2013
| AceDB tag | Postgres table | Current - Nameserver nightly dump | Current - WS bimonthly release | Future - Geneace nightly dump | Future - WS bimonthly release | Use - Paper or meeting abstract gene connection | Use - OA data type curation | Use - Dumping scripts | Use - Protein2GO data conversion | Comment |
|---|---|---|---|---|---|---|---|---|---|---|
| WBGene identifier | gin_wbgene | Yes | Yes | Yes | Yes | Yes | ||||
| CGC_name | gin_locus | Yes | Yes | Yes | Yes | No | ||||
| Other_name | gin_synonyms | No | Yes | Yes | No | Yes | Yes | No | ||
| Sequence_name | gin_seqname | Yes | Yes | Yes | Yes | No | ||||
| Public_name | gin_? | Yes (but only when non CGC_name or Sequence_name) | Don't need (Public_name also in Other_name - confirm this is always the case) | Not if also in Other_name | Not if also in Other_name | Not if also in Other_name | No | Could remove this table, but need to confirm if any scripts look at Public_name but not Other_name (I doubt it, but we should check) |
