WBConfCall 2024.03.21-Agenda and Minutes

Agenda

OMIM identifier and Disease Ontology (DO) file changes

• https://github.com/WormBase/website/issues/9444
• The Disease Ontology (DO) is planning to change the prefix on OMIM IDs from "OMIM:" to "MIM:", tentative release is late April.
• Links:
  • https://omim.org/help/linking#1_7
  • https://github.com/DiseaseOntology/HumanDiseaseOntology/issues/1301
• Need to update any WB pipelines accordingly that might be affected by this change. Apparently they will put out test files
• Affected: OMIM ids are in the manual curation at Caltech postgres database but don't show on website (check if dumped for data upload)
• Affected: OMIM ids coming from the "potential models" pipeline run at Hinxton for "Potential models disease display" on WB website
• DO test files are out:
  • MIM - https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/mim_test_release
  • Acronym tags - https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/acronym_test
• Ticket in WormBase GitHub related to OMIM and DO file changes: https://github.com/WormBase/website/issues/9444 --please add to this ticket so we can keep all the changes needed in one place

WS292

• delivered on time on 29th Feb. Announced on Slack #ws-build but only 3 peeple saw the message.*

WS293

• data upload 15th April or any time preferable for Caltech.*
• No need to chage schema for update of ribosomal genes/protein names. https://github.com/WormBase/website/issues/9400*

Help desk officer roster

Who should be taken off and who should be added on?

• <http://wiki.wormbase.org/index.php/Help_desk_schedule>*