Difference between revisions of "WBConfCall 2024.03.21-Agenda and Minutes"
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==Agenda== | ==Agenda== | ||
| + | ===OMIM identifier and Disease Ontology (DO) file changes=== | ||
| + | *https://github.com/WormBase/website/issues/9444 | ||
| + | *The Disease Ontology (DO) is planning to change the prefix on OMIM IDs from "OMIM:" to "MIM:", tentative release is late April. | ||
| + | *Links: | ||
| + | **https://omim.org/help/linking#1_7 | ||
| + | **https://github.com/DiseaseOntology/HumanDiseaseOntology/issues/1301 | ||
| + | *Need to update any WB pipelines accordingly that might be affected by this change. Apparently they will put out test files | ||
| + | *Affected: OMIM ids are in the manual curation at Caltech postgres database but don't show on website (check if dumped for data upload) | ||
| + | *Affected: OMIM ids coming from the "potential models" pipeline run at Hinxton for "Potential models disease display" on WB website | ||
| + | *DO test files are out: | ||
| + | **MIM - https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/mim_test_release | ||
| + | **Acronym tags - https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/acronym_test | ||
Revision as of 15:08, 21 March 2024
Agenda
OMIM identifier and Disease Ontology (DO) file changes
- https://github.com/WormBase/website/issues/9444
- The Disease Ontology (DO) is planning to change the prefix on OMIM IDs from "OMIM:" to "MIM:", tentative release is late April.
- Links:
- Need to update any WB pipelines accordingly that might be affected by this change. Apparently they will put out test files
- Affected: OMIM ids are in the manual curation at Caltech postgres database but don't show on website (check if dumped for data upload)
- Affected: OMIM ids coming from the "potential models" pipeline run at Hinxton for "Potential models disease display" on WB website
- DO test files are out:
